SMIM17 report

Query

Invalid input gene. Please select from the suggestions.

I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
GABAergic neuron	3 studies	45% ± 7%	Explore
glutamatergic neuron	3 studies	43% ± 12%	Explore

II. Expression across tissues

sc-RNAseq dataData table

Name	Number of supported studies	Average coverage
brain	3 studies	30% ± 9%	Explore

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
brain	97%	178.04	2560 / 2642	95%	4.25	667 / 705
ovary	95%	32.09	171 / 180	33%	0.65	141 / 430
adrenal gland	79%	16.93	203 / 258	46%	0.84	106 / 230
breast	87%	25.43	401 / 459	36%	0.69	399 / 1118
prostate	87%	25.55	212 / 245	33%	0.52	164 / 502
uterus	95%	36.18	162 / 170	18%	0.76	84 / 459
thymus	87%	22.02	566 / 653	21%	0.30	129 / 605
bladder	95%	24.76	20 / 21	10%	0.21	51 / 504
kidney	71%	16.92	63 / 89	19%	0.30	170 / 901
intestine	79%	29.14	767 / 966	8%	0.12	42 / 527
lung	71%	16.32	410 / 578	14%	0.27	159 / 1155
adipose	83%	21.61	1005 / 1204	0%	0	0 / 0
blood vessel	81%	22.46	1088 / 1335	0%	0	0 / 0
esophagus	67%	23.84	965 / 1445	5%	0.10	9 / 183
stomach	58%	15.40	210 / 359	10%	0.18	29 / 286
skin	46%	9.28	839 / 1809	18%	0.33	83 / 472
spleen	59%	12.98	142 / 241	0%	0	0 / 0
heart	59%	11.71	506 / 861	0%	0	0 / 0
pancreas	42%	8.50	138 / 328	8%	0.12	15 / 178
muscle	22%	3.68	174 / 803	0%	0	0 / 0
liver	10%	1.36	22 / 226	3%	0.06	13 / 406
peripheral blood	10%	1.97	95 / 929	0%	0	0 / 0
eye	0%	0	0 / 0	9%	0.12	7 / 80
tonsil	0%	0	0 / 0	7%	0.07	3 / 45
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
lymph node	0%	0	0 / 0	0%	0	0 / 29
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0
ureter	0%	0	0 / 0	0%	0	0 / 1