SLCO5A1 report

Query

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I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
GABAergic neuron	7 studies	29% ± 11%	Explore
interneuron	6 studies	34% ± 17%	Explore
cardiac muscle cell	5 studies	28% ± 11%	Explore
oligodendrocyte precursor cell	4 studies	23% ± 5%	Explore
glutamatergic neuron	4 studies	27% ± 8%	Explore
glycinergic amacrine cell	3 studies	24% ± 7%	Explore

II. Expression across tissues

sc-RNAseq dataData table

Name	Number of supported studies	Average coverage
brain	5 studies	25% ± 6%	Explore

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
prostate	90%	424.35	220 / 245	97%	5.40	486 / 502
brain	40%	49.77	1045 / 2642	69%	2.17	485 / 705
muscle	100%	1624.13	803 / 803	0%	0	0 / 0
heart	95%	875.97	816 / 861	0%	0	0 / 0
blood vessel	92%	422.22	1225 / 1335	0%	0	0 / 0
intestine	40%	66.93	391 / 966	45%	0.97	237 / 527
pancreas	41%	52.81	136 / 328	28%	0.66	50 / 178
lymph node	0%	0	0 / 0	66%	3.11	19 / 29
esophagus	43%	133.74	615 / 1445	17%	0.44	32 / 183
lung	28%	39.37	163 / 578	30%	0.91	351 / 1155
stomach	13%	24.50	45 / 359	40%	1.01	115 / 286
spleen	51%	64.23	123 / 241	0%	0	0 / 0
eye	0%	0	0 / 0	39%	2.60	31 / 80
bladder	14%	12.05	3 / 21	21%	0.62	104 / 504
uterus	13%	14.76	22 / 170	20%	0.76	90 / 459
skin	8%	15.68	148 / 1809	21%	0.99	98 / 472
tonsil	0%	0	0 / 0	27%	0.61	12 / 45
thymus	5%	9.28	34 / 653	16%	3.81	98 / 605
breast	8%	8.80	35 / 459	12%	0.38	135 / 1118
peripheral blood	20%	558.69	182 / 929	0%	0	0 / 0
ovary	8%	9.93	14 / 180	6%	0.14	27 / 430
adipose	11%	18.71	138 / 1204	0%	0	0 / 0
kidney	7%	7.89	6 / 89	4%	0.06	37 / 901
adrenal gland	3%	5.42	9 / 258	7%	0.20	16 / 230
liver	3%	4.27	7 / 226	5%	0.09	19 / 406
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0
ureter	0%	0	0 / 0	0%	0	0 / 1