Name | Number of supported studies | Average coverage | |
---|---|---|---|
myeloid cell | 6 studies | 20% ± 5% | |
macrophage | 5 studies | 22% ± 5% | |
glutamatergic neuron | 4 studies | 22% ± 7% | |
epithelial cell | 3 studies | 26% ± 6% | |
alveolar macrophage | 3 studies | 23% ± 7% | |
astrocyte | 3 studies | 29% ± 3% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 4 studies | 17% ± 2% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
prostate | 100% | 3461.05 | 245 / 245 | 100% | 19.71 | 502 / 502 |
stomach | 100% | 1892.70 | 359 / 359 | 100% | 19.83 | 286 / 286 |
esophagus | 100% | 2215.97 | 1444 / 1445 | 100% | 21.73 | 183 / 183 |
lung | 100% | 3699.09 | 578 / 578 | 100% | 21.90 | 1153 / 1155 |
thymus | 100% | 2607.06 | 653 / 653 | 100% | 16.39 | 603 / 605 |
kidney | 100% | 2935.18 | 89 / 89 | 100% | 19.52 | 898 / 901 |
breast | 100% | 2992.95 | 459 / 459 | 99% | 19.85 | 1110 / 1118 |
intestine | 100% | 2606.08 | 966 / 966 | 99% | 19.56 | 523 / 527 |
bladder | 100% | 2220.95 | 21 / 21 | 99% | 22.57 | 500 / 504 |
pancreas | 100% | 2091.67 | 327 / 328 | 99% | 24.66 | 177 / 178 |
uterus | 100% | 2750.25 | 170 / 170 | 99% | 22.52 | 455 / 459 |
ovary | 100% | 10350.44 | 180 / 180 | 98% | 17.18 | 422 / 430 |
skin | 100% | 2664.85 | 1809 / 1809 | 98% | 12.94 | 461 / 472 |
brain | 97% | 1152.53 | 2573 / 2642 | 96% | 14.12 | 676 / 705 |
liver | 100% | 2028.44 | 226 / 226 | 91% | 11.58 | 371 / 406 |
adrenal gland | 100% | 13571.81 | 258 / 258 | 84% | 36.04 | 194 / 230 |
adipose | 100% | 3069.21 | 1204 / 1204 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 20.27 | 29 / 29 |
spleen | 100% | 5840.52 | 241 / 241 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 100% | 24.07 | 1 / 1 |
blood vessel | 100% | 2295.89 | 1333 / 1335 | 0% | 0 | 0 / 0 |
heart | 99% | 1401.57 | 854 / 861 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 98% | 21.10 | 44 / 45 |
muscle | 97% | 947.65 | 780 / 803 | 0% | 0 | 0 / 0 |
peripheral blood | 97% | 2986.52 | 898 / 929 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 96% | 8.74 | 77 / 80 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0051480 | Biological process | regulation of cytosolic calcium ion concentration |
GO_0050796 | Biological process | regulation of insulin secretion |
GO_0006811 | Biological process | monoatomic ion transport |
GO_0006874 | Biological process | intracellular calcium ion homeostasis |
GO_0051560 | Biological process | mitochondrial calcium ion homeostasis |
GO_0086036 | Biological process | regulation of cardiac muscle cell membrane potential |
GO_2001256 | Biological process | regulation of store-operated calcium entry |
GO_0099093 | Biological process | calcium export from the mitochondrion |
GO_0006851 | Biological process | mitochondrial calcium ion transmembrane transport |
GO_1901623 | Biological process | regulation of lymphocyte chemotaxis |
GO_0035725 | Biological process | sodium ion transmembrane transport |
GO_0042593 | Biological process | glucose homeostasis |
GO_0005886 | Cellular component | plasma membrane |
GO_0030061 | Cellular component | mitochondrial crista |
GO_0016020 | Cellular component | membrane |
GO_0031966 | Cellular component | mitochondrial membrane |
GO_0042383 | Cellular component | sarcolemma |
GO_0005743 | Cellular component | mitochondrial inner membrane |
GO_0042803 | Molecular function | protein homodimerization activity |
GO_0086038 | Molecular function | calcium:sodium antiporter activity involved in regulation of cardiac muscle cell membrane potential |
GO_0015368 | Molecular function | calcium:monoatomic cation antiporter activity |
GO_0005432 | Molecular function | calcium:sodium antiporter activity |
Gene name | SLC8B1 |
Protein name | Mitochondrial sodium/calcium exchanger protein (Na(+)/K(+)/Ca(2+)-exchange protein 6) (Sodium/calcium exchanger protein, mitochondrial) (Sodium/potassium/calcium exchanger 6) (Solute carrier family 24 member 6) (Solute carrier family 8 member B1) Solute carrier family 8 member B1 |
Synonyms | NCLX NCKX6 SLC24A6 |
Description | FUNCTION: Mitochondrial sodium/calcium antiporter that mediates sodium-dependent calcium efflux from mitochondrion, by mediating the exchange of 3 sodium ions per 1 calcium ion . Plays a central role in mitochondrial calcium homeostasis by mediating mitochondrial calcium extrusion: calcium efflux is essential for mitochondrial function and cell survival, notably in cardiomyocytes (By similarity). Regulates rates of glucose-dependent insulin secretion in pancreatic beta-cells during the first phase of insulin secretion: acts by mediating efflux of calcium from mitochondrion, thereby affecting cytoplasmic calcium responses . Required for store-operated Ca(2+) entry (SOCE) and Ca(2+) release-activated Ca(2+) (CRAC) channel regulation: sodium transport by SLC8B1 leads to promote calcium-shuttling that modulates mitochondrial redox status, thereby regulating SOCE activity . Involved in B-lymphocyte chemotaxis (By similarity). Able to transport Ca(2+) in exchange of either Li(+) or Na(+), explaining how Li(+) catalyzes Ca(2+) exchange . In contrast to other members of the family its function is independent of K(+) . . |
Accessions | ENST00000550672.5 ENST00000202831.7 [Q6J4K2-1] F8VTU4 H0YI75 ENST00000549069.5 F8VW44 ENST00000550047.5 ENST00000549181.5 A0A0B4J252 F8VWW9 F8W134 ENST00000546737.5 [Q6J4K2-2] ENST00000549372.1 ENST00000680972.1 [Q6J4K2-1] ENST00000552014.5 [Q6J4K2-1] F8VR99 ENST00000552613.1 ENST00000548186.5 ENST00000549605.5 Q6J4K2 |