Name | Number of supported studies | Average coverage | |
---|---|---|---|
epithelial cell | 9 studies | 34% ± 22% | |
enterocyte | 6 studies | 32% ± 6% | |
goblet cell | 6 studies | 26% ± 11% | |
epithelial cell of proximal tubule | 5 studies | 21% ± 6% | |
abnormal cell | 5 studies | 19% ± 2% | |
non-classical monocyte | 4 studies | 22% ± 5% | |
fibroblast | 4 studies | 20% ± 5% | |
ciliated cell | 4 studies | 25% ± 6% | |
memory B cell | 4 studies | 17% ± 1% | |
classical monocyte | 3 studies | 21% ± 3% | |
progenitor cell | 3 studies | 17% ± 1% | |
transit amplifying cell | 3 studies | 23% ± 1% | |
basal cell | 3 studies | 31% ± 8% | |
smooth muscle cell | 3 studies | 16% ± 1% | |
dendritic cell | 3 studies | 25% ± 3% | |
enteroendocrine cell | 3 studies | 23% ± 7% | |
hepatocyte | 3 studies | 41% ± 27% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 3974.70 | 1445 / 1445 | 100% | 138.23 | 183 / 183 |
liver | 100% | 8979.86 | 226 / 226 | 100% | 271.99 | 406 / 406 |
ovary | 100% | 3795.51 | 180 / 180 | 100% | 154.32 | 430 / 430 |
pancreas | 100% | 2664.62 | 328 / 328 | 100% | 131.48 | 178 / 178 |
thymus | 100% | 4567.23 | 653 / 653 | 100% | 123.21 | 605 / 605 |
skin | 100% | 4662.68 | 1809 / 1809 | 100% | 173.65 | 471 / 472 |
uterus | 100% | 3170.52 | 170 / 170 | 100% | 151.16 | 458 / 459 |
kidney | 100% | 6429.74 | 89 / 89 | 100% | 168.34 | 898 / 901 |
stomach | 100% | 3648.80 | 359 / 359 | 100% | 173.37 | 285 / 286 |
intestine | 100% | 5012.19 | 966 / 966 | 100% | 197.60 | 525 / 527 |
prostate | 100% | 5144.59 | 245 / 245 | 100% | 228.90 | 500 / 502 |
brain | 100% | 2413.27 | 2630 / 2642 | 100% | 156.58 | 704 / 705 |
adrenal gland | 100% | 6334.18 | 258 / 258 | 99% | 182.24 | 228 / 230 |
bladder | 100% | 3697.81 | 21 / 21 | 99% | 202.81 | 498 / 504 |
lung | 100% | 3209.75 | 576 / 578 | 99% | 156.15 | 1142 / 1155 |
breast | 100% | 7991.57 | 459 / 459 | 98% | 139.36 | 1100 / 1118 |
adipose | 100% | 9498.14 | 1204 / 1204 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 100% | 230.83 | 80 / 80 |
lymph node | 0% | 0 | 0 / 0 | 100% | 176.90 | 29 / 29 |
spleen | 100% | 2860.48 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 135.96 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 245.78 | 1 / 1 |
blood vessel | 100% | 4511.38 | 1334 / 1335 | 0% | 0 | 0 / 0 |
heart | 92% | 1338.20 | 789 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 83% | 2025.19 | 768 / 929 | 0% | 0 | 0 / 0 |
muscle | 62% | 855.93 | 500 / 803 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0046949 | Biological process | fatty-acyl-CoA biosynthetic process |
GO_0006094 | Biological process | gluconeogenesis |
GO_0006843 | Biological process | mitochondrial citrate transmembrane transport |
GO_0070062 | Cellular component | extracellular exosome |
GO_0005743 | Cellular component | mitochondrial inner membrane |
GO_0005739 | Cellular component | mitochondrion |
GO_0005634 | Cellular component | nucleus |
GO_0015137 | Molecular function | citrate transmembrane transporter activity |
GO_0015297 | Molecular function | antiporter activity |
GO_0015142 | Molecular function | tricarboxylic acid transmembrane transporter activity |
GO_0071913 | Molecular function | citrate secondary active transmembrane transporter activity |
Gene name | SLC25A1 |
Protein name | Tricarboxylate transport protein, mitochondrial (Citrate transport protein) (CTP) (Mitochondrial citrate carrier) (CIC) (Solute carrier family 25 member 1) (Tricarboxylate carrier protein) Citrate transport protein |
Synonyms | hCG_17246 SLC20A3 |
Description | FUNCTION: Mitochondrial electroneutral antiporter that exports citrate from the mitochondria into the cytosol in exchange for malate . Also able to mediate the exchange of citrate for isocitrate, phosphoenolpyruvate, cis-aconitate and to a lesser extend cis-aconitate, maleate and succinate . In the cytoplasm citrate is important in the regulation of glycolysis through a feedback mechanism and in the production of acetyl-CoA which is needed for the synthesis of fatty acids, sterols, prostaglandins, dolichol and coenzyme Q (CoQ). Required for proper neuromuscular junction formation (Probable). . |
Accessions | D9HTE9 ENST00000215882.10 P53007 D3DX16 ENST00000451283.5 |