Name | Number of supported studies | Average coverage | |
---|---|---|---|
astrocyte | 12 studies | 32% ± 15% | |
microglial cell | 6 studies | 19% ± 4% | |
macrophage | 6 studies | 31% ± 4% | |
oligodendrocyte precursor cell | 5 studies | 27% ± 6% | |
endothelial cell | 3 studies | 18% ± 3% | |
epithelial cell | 3 studies | 26% ± 5% | |
GABAergic neuron | 3 studies | 32% ± 4% | |
glutamatergic neuron | 3 studies | 35% ± 7% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 4 studies | 27% ± 10% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
brain | 100% | 2183.52 | 2641 / 2642 | 100% | 64.45 | 703 / 705 |
esophagus | 100% | 957.71 | 1440 / 1445 | 99% | 27.54 | 182 / 183 |
thymus | 100% | 1325.34 | 653 / 653 | 98% | 19.97 | 591 / 605 |
ovary | 100% | 808.43 | 180 / 180 | 97% | 24.78 | 419 / 430 |
kidney | 100% | 1135.25 | 89 / 89 | 97% | 21.94 | 877 / 901 |
intestine | 100% | 932.46 | 963 / 966 | 97% | 23.83 | 512 / 527 |
pancreas | 99% | 655.95 | 326 / 328 | 97% | 23.43 | 173 / 178 |
lung | 97% | 712.70 | 561 / 578 | 98% | 24.08 | 1130 / 1155 |
uterus | 99% | 711.87 | 168 / 170 | 96% | 27.55 | 439 / 459 |
skin | 99% | 768.12 | 1796 / 1809 | 95% | 65.63 | 448 / 472 |
stomach | 100% | 1000.77 | 358 / 359 | 94% | 24.19 | 270 / 286 |
breast | 100% | 1086.01 | 459 / 459 | 90% | 20.12 | 1011 / 1118 |
prostate | 100% | 687.66 | 244 / 245 | 88% | 13.38 | 442 / 502 |
bladder | 95% | 614.90 | 20 / 21 | 92% | 19.70 | 465 / 504 |
adrenal gland | 100% | 1032.41 | 258 / 258 | 87% | 13.51 | 201 / 230 |
liver | 99% | 476.27 | 223 / 226 | 75% | 11.74 | 306 / 406 |
spleen | 100% | 995.60 | 241 / 241 | 0% | 0 | 0 / 0 |
adipose | 100% | 1124.06 | 1203 / 1204 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 99% | 87.27 | 79 / 80 |
tonsil | 0% | 0 | 0 / 0 | 96% | 32.03 | 43 / 45 |
lymph node | 0% | 0 | 0 / 0 | 76% | 10.82 | 22 / 29 |
heart | 68% | 245.46 | 587 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 62% | 280.13 | 575 / 929 | 0% | 0 | 0 / 0 |
blood vessel | 60% | 299.57 | 798 / 1335 | 0% | 0 | 0 / 0 |
muscle | 27% | 89.79 | 219 / 803 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0051610 | Biological process | serotonin uptake |
GO_0000296 | Biological process | spermine transport |
GO_0015848 | Biological process | spermidine transport |
GO_1902047 | Biological process | polyamine transmembrane transport |
GO_1902600 | Biological process | proton transmembrane transport |
GO_0030672 | Cellular component | synaptic vesicle membrane |
GO_0030667 | Cellular component | secretory granule membrane |
GO_0015311 | Molecular function | monoamine:proton antiporter activity |
GO_0022857 | Molecular function | transmembrane transporter activity |
GO_0015312 | Molecular function | polyamine:proton antiporter activity |
Gene name | SLC18B1 |
Protein name | Solute carrier family 18 member B1 MFS-type transporter SLC18B1 (Solute carrier family 18 member B1) (Vesicular polyamine transporter) (VPAT) |
Synonyms | C6orf192 |
Description | FUNCTION: Proton-coupled polyamine antiporter involved in the translocation of polyamines from cytosol into secretory vesicles prior to their release via exocytosis. Uses the electrochemical proton gradient generated by a V-type proton-pumping ATPase to couple the efflux of protons with the uptake of a polyamine molecule . Facilitates vesicular storage of spermine and spermidine in astrocytes with an impact on glutamatergic neuronal transmission and memory formation (By similarity). Upon antigen stimulation, regulates polyamine accumulation and release in mast cell secretory granules, which in turn potentiates mast cell degranulation and histamine secretion (By similarity). . |
Accessions | Q6NT16 A0A3B3ISL3 ENST00000647932.1 ENST00000650298.1 ENST00000650136.1 A0A3B3ITL9 ENST00000275227.9 A0A3B3IT67 A0A3B3IU67 ENST00000650278.1 |