SEMA6C | OmnibusX

Name	Number of supported studies	Average coverage
glutamatergic neuron	4 studies	21% ± 2%	Explore

sc-RNAseq data

Insufficient scRNA-seq data for expression of SEMA6C at tissue level.

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
ovary	100%	3212.28	180 / 180	97%	13.10	415 / 430
prostate	99%	1966.27	242 / 245	95%	5.31	477 / 502
breast	99%	1882.66	453 / 459	94%	7.69	1052 / 1118
kidney	98%	2253.79	87 / 89	90%	7.93	813 / 901
brain	88%	2937.62	2333 / 2642	99%	18.40	701 / 705
bladder	100%	1795.86	21 / 21	80%	6.07	405 / 504
uterus	99%	3073.86	169 / 170	81%	12.66	370 / 459
esophagus	83%	1494.38	1205 / 1445	92%	6.21	168 / 183
lung	86%	1128.12	498 / 578	86%	6.70	991 / 1155
thymus	89%	1088.85	581 / 653	79%	3.49	475 / 605
liver	73%	1285.89	165 / 226	94%	9.68	382 / 406
skin	78%	1444.70	1417 / 1809	76%	4.61	358 / 472
intestine	91%	1447.55	876 / 966	58%	2.28	307 / 527
stomach	59%	832.38	211 / 359	68%	3.89	194 / 286
adrenal gland	36%	336.90	92 / 258	78%	14.52	179 / 230
pancreas	17%	151.18	55 / 328	92%	4.84	163 / 178
muscle	100%	18335.93	803 / 803	0%	0	0 / 0
ureter	0%	0	0 / 0	100%	4.11	1 / 1
heart	100%	4260.53	858 / 861	0%	0	0 / 0
adipose	97%	1820.53	1172 / 1204	0%	0	0 / 0
blood vessel	80%	944.77	1067 / 1335	0%	0	0 / 0
tonsil	0%	0	0 / 0	76%	4.92	34 / 45
eye	0%	0	0 / 0	53%	2.17	42 / 80
spleen	46%	429.85	110 / 241	0%	0	0 / 0
lymph node	0%	0	0 / 0	21%	0.70	6 / 29
peripheral blood	1%	19.22	13 / 929	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0

GO_0071526	Biological process	semaphorin-plexin signaling pathway
GO_0030335	Biological process	positive regulation of cell migration
GO_0001755	Biological process	neural crest cell migration
GO_0007411	Biological process	axon guidance
GO_0050919	Biological process	negative chemotaxis
GO_0005886	Cellular component	plasma membrane
GO_0045499	Molecular function	chemorepellent activity
GO_0030215	Molecular function	semaphorin receptor binding

Gene name	SEMA6C
Protein name	SEMA6C protein Semaphorin-6C (Semaphorin-Y) (Sema Y)
Synonyms	KIAA1869 SEMAY
Description	FUNCTION: Shows growth cone collapsing activity on dorsal root ganglion (DRG) neurons in vitro. May be a stop signal for the DRG neurons in their target areas, and possibly also for other neurons. May also be involved in the maintenance and remodeling of neuronal connections. .
Accessions	Q9H3T2 Q1RMY5 Q24JR3 ENST00000368912.7 [Q9H3T2-2] ENST00000368913.7 [Q9H3T2-3] ENST00000368914.8 [Q9H3T2-1] ENST00000341697.7 [Q9H3T2-1]

SEMA6C report