SCRN3 report

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I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
epithelial cell	4 studies	17% ± 1%	Explore
astrocyte	4 studies	23% ± 4%	Explore
glutamatergic neuron	4 studies	39% ± 15%	Explore
oligodendrocyte	4 studies	21% ± 2%	Explore
GABAergic neuron	3 studies	41% ± 5%	Explore
oligodendrocyte precursor cell	3 studies	27% ± 1%	Explore
interneuron	3 studies	36% ± 18%	Explore

II. Expression across tissues

sc-RNAseq dataData table

Name	Number of supported studies	Average coverage
brain	4 studies	34% ± 9%	Explore

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
esophagus	100%	908.99	1445 / 1445	100%	21.13	183 / 183
prostate	100%	915.88	245 / 245	100%	20.84	502 / 502
brain	100%	1295.69	2642 / 2642	100%	27.63	704 / 705
breast	100%	750.49	459 / 459	100%	19.87	1114 / 1118
thymus	100%	903.83	653 / 653	99%	15.12	600 / 605
stomach	100%	666.28	359 / 359	99%	13.03	283 / 286
bladder	100%	845.29	21 / 21	99%	13.05	498 / 504
ovary	100%	642.82	180 / 180	99%	9.85	424 / 430
pancreas	99%	565.79	326 / 328	99%	11.88	176 / 178
intestine	100%	834.82	966 / 966	98%	12.56	517 / 527
kidney	100%	666.84	89 / 89	98%	14.19	882 / 901
uterus	99%	639.78	169 / 170	98%	13.09	449 / 459
lung	96%	654.41	556 / 578	100%	17.48	1155 / 1155
adrenal gland	100%	1242.55	258 / 258	96%	18.16	221 / 230
liver	100%	660.14	225 / 226	96%	9.69	389 / 406
skin	99%	869.87	1799 / 1809	93%	13.61	439 / 472
lymph node	0%	0	0 / 0	100%	8.40	29 / 29
spleen	100%	678.88	241 / 241	0%	0	0 / 0
ureter	0%	0	0 / 0	100%	7.38	1 / 1
muscle	100%	1193.27	802 / 803	0%	0	0 / 0
adipose	100%	747.53	1201 / 1204	0%	0	0 / 0
blood vessel	100%	766.64	1330 / 1335	0%	0	0 / 0
tonsil	0%	0	0 / 0	98%	13.78	44 / 45
heart	95%	910.66	814 / 861	0%	0	0 / 0
eye	0%	0	0 / 0	60%	4.49	48 / 80
peripheral blood	60%	313.76	553 / 929	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0