Name | Number of supported studies | Average coverage | |
---|---|---|---|
fibroblast | 21 studies | 46% ± 18% | |
pericyte | 12 studies | 26% ± 9% | |
smooth muscle cell | 5 studies | 23% ± 6% | |
glial cell | 5 studies | 52% ± 25% | |
GABAergic neuron | 4 studies | 36% ± 18% | |
Schwann cell | 4 studies | 78% ± 11% | |
adventitial cell | 3 studies | 31% ± 12% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
heart | 4 studies | 20% ± 3% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
prostate | 94% | 3411.12 | 230 / 245 | 83% | 4.06 | 419 / 502 |
lung | 99% | 10240.98 | 575 / 578 | 61% | 3.63 | 706 / 1155 |
ovary | 100% | 11412.03 | 180 / 180 | 11% | 0.31 | 46 / 430 |
esophagus | 78% | 6070.19 | 1130 / 1445 | 25% | 1.38 | 45 / 183 |
heart | 97% | 3827.28 | 834 / 861 | 0% | 0 | 0 / 0 |
intestine | 83% | 7609.70 | 806 / 966 | 12% | 0.56 | 62 / 527 |
uterus | 82% | 3431.57 | 139 / 170 | 7% | 0.32 | 32 / 459 |
pancreas | 19% | 268.86 | 62 / 328 | 69% | 3.99 | 123 / 178 |
adrenal gland | 35% | 550.34 | 90 / 258 | 51% | 6.28 | 117 / 230 |
bladder | 71% | 1513.52 | 15 / 21 | 12% | 0.52 | 61 / 504 |
breast | 51% | 1201.61 | 236 / 459 | 31% | 0.98 | 349 / 1118 |
stomach | 45% | 2263.45 | 160 / 359 | 16% | 0.78 | 47 / 286 |
brain | 5% | 102.44 | 136 / 2642 | 42% | 2.79 | 296 / 705 |
thymus | 9% | 121.81 | 59 / 653 | 16% | 1.43 | 98 / 605 |
adipose | 23% | 451.87 | 279 / 1204 | 0% | 0 | 0 / 0 |
spleen | 22% | 351.49 | 52 / 241 | 0% | 0 | 0 / 0 |
muscle | 19% | 268.64 | 152 / 803 | 0% | 0 | 0 / 0 |
skin | 12% | 175.60 | 211 / 1809 | 6% | 0.72 | 27 / 472 |
blood vessel | 17% | 543.96 | 227 / 1335 | 0% | 0 | 0 / 0 |
kidney | 9% | 115.90 | 8 / 89 | 3% | 0.08 | 26 / 901 |
liver | 1% | 17.27 | 3 / 226 | 6% | 0.14 | 24 / 406 |
eye | 0% | 0 | 0 / 0 | 3% | 0.03 | 2 / 80 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 29 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
peripheral blood | 0% | 0 | 0 / 929 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 45 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0055078 | Biological process | sodium ion homeostasis |
GO_0086002 | Biological process | cardiac muscle cell action potential involved in contraction |
GO_0007231 | Biological process | osmosensory signaling pathway |
GO_0035725 | Biological process | sodium ion transmembrane transport |
GO_0019725 | Biological process | cellular homeostasis |
GO_0009617 | Biological process | response to bacterium |
GO_0001518 | Cellular component | voltage-gated sodium channel complex |
GO_0097386 | Cellular component | glial cell projection |
GO_0005886 | Cellular component | plasma membrane |
GO_1990760 | Molecular function | osmolarity-sensing monoatomic cation channel activity |
GO_0005272 | Molecular function | sodium channel activity |
GO_0005248 | Molecular function | voltage-gated sodium channel activity |
GO_0044325 | Molecular function | transmembrane transporter binding |
Gene name | SCN7A |
Protein name | Sodium voltage-gated channel alpha subunit 7 Sodium channel protein type 7 subunit alpha (Atypical sodium channel Nav2.1) (Nax channel) (Sodium channel protein type VII subunit alpha) |
Synonyms | SCN6A |
Description | FUNCTION: Sodium leak channel functioning as an osmosensor regulating sodium ion levels in various tissues and organs. While most sodium channels are voltage-gated, SCN7A is not and lets sodium flow through membrane along its concentration gradient . In glial cells of the central nervous system, senses body-fluid sodium levels and controls salt intake behavior as well as voluntary water intake through activation of nearby neurons to maintain appropriate sodium levels in the body (By similarity). By mediating sodium influx into keratinocytes, also plays a role in skin barrier homeostasis . . |
Accessions | F8WD82 ENST00000424326.5 Q01118 ENST00000643258.1 ENST00000650747.1 ENST00000419992.6 A0A494C195 ENST00000441411.2 C9JW43 |