Name | Number of supported studies | Average coverage | |
---|---|---|---|
astrocyte | 10 studies | 28% ± 9% | |
glutamatergic neuron | 9 studies | 45% ± 23% | |
oligodendrocyte precursor cell | 8 studies | 24% ± 7% | |
GABAergic neuron | 8 studies | 45% ± 20% | |
oligodendrocyte | 8 studies | 25% ± 8% | |
interneuron | 6 studies | 43% ± 17% | |
neuron | 5 studies | 28% ± 8% | |
endothelial cell | 4 studies | 30% ± 14% | |
retinal ganglion cell | 4 studies | 32% ± 7% | |
GABAergic interneuron | 3 studies | 28% ± 3% | |
retina horizontal cell | 3 studies | 20% ± 1% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 10 studies | 37% ± 18% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
brain | 99% | 3026.04 | 2614 / 2642 | 100% | 19.45 | 702 / 705 |
esophagus | 97% | 3556.20 | 1408 / 1445 | 90% | 7.48 | 164 / 183 |
prostate | 98% | 2737.19 | 239 / 245 | 83% | 4.36 | 419 / 502 |
adrenal gland | 98% | 1460.52 | 253 / 258 | 82% | 5.47 | 189 / 230 |
breast | 99% | 1952.05 | 456 / 459 | 81% | 4.70 | 900 / 1118 |
skin | 87% | 3164.36 | 1571 / 1809 | 91% | 11.53 | 430 / 472 |
lung | 98% | 1887.67 | 568 / 578 | 78% | 4.07 | 904 / 1155 |
uterus | 99% | 2909.91 | 169 / 170 | 70% | 5.21 | 323 / 459 |
pancreas | 91% | 1161.50 | 299 / 328 | 72% | 3.04 | 129 / 178 |
stomach | 82% | 1817.97 | 296 / 359 | 67% | 4.04 | 193 / 286 |
bladder | 100% | 3575.19 | 21 / 21 | 46% | 2.85 | 233 / 504 |
intestine | 92% | 2320.78 | 889 / 966 | 53% | 2.52 | 278 / 527 |
ovary | 99% | 1791.38 | 179 / 180 | 40% | 1.42 | 174 / 430 |
kidney | 55% | 592.01 | 49 / 89 | 84% | 5.82 | 754 / 901 |
thymus | 95% | 1162.25 | 622 / 653 | 40% | 1.45 | 243 / 605 |
blood vessel | 100% | 4731.95 | 1335 / 1335 | 0% | 0 | 0 / 0 |
muscle | 100% | 3911.26 | 803 / 803 | 0% | 0 | 0 / 0 |
spleen | 100% | 2970.19 | 241 / 241 | 0% | 0 | 0 / 0 |
adipose | 100% | 2026.50 | 1202 / 1204 | 0% | 0 | 0 / 0 |
heart | 95% | 2007.18 | 819 / 861 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 76% | 5.22 | 34 / 45 |
lymph node | 0% | 0 | 0 / 0 | 69% | 5.81 | 20 / 29 |
liver | 18% | 143.85 | 41 / 226 | 19% | 0.80 | 77 / 406 |
eye | 0% | 0 | 0 / 0 | 28% | 1.06 | 22 / 80 |
peripheral blood | 21% | 1370.69 | 193 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0006457 | Biological process | protein folding |
GO_0090084 | Biological process | negative regulation of inclusion body assembly |
GO_0070852 | Cellular component | cell body fiber |
GO_0030424 | Cellular component | axon |
GO_0030425 | Cellular component | dendrite |
GO_0005737 | Cellular component | cytoplasm |
GO_0005739 | Cellular component | mitochondrion |
GO_0005634 | Cellular component | nucleus |
GO_0051087 | Molecular function | protein-folding chaperone binding |
GO_0042802 | Molecular function | identical protein binding |
GO_0070628 | Molecular function | proteasome binding |
GO_0030544 | Molecular function | Hsp70 protein binding |
Gene name | SACS |
Protein name | Sacsin molecular chaperone Sacsin (DnaJ homolog subfamily C member 29) (DNAJC29) |
Synonyms | KIAA0730 |
Description | FUNCTION: Co-chaperone which acts as a regulator of the Hsp70 chaperone machinery and may be involved in the processing of other ataxia-linked proteins. . |
Accessions | ENST00000682944.1 A0A804HIG5 ENST00000684385.1 ENST00000683680.1 A0A804HKB3 ENST00000382292.9 [Q9NZJ4-1] ENST00000682547.1 ENST00000683367.1 ENST00000683270.1 ENST00000684325.1 ENST00000684163.1 ENST00000683489.1 B2REB0 A0A804HIQ1 A0A804HJS2 ENST00000402364.1 [Q9NZJ4-2] A0A804HK18 A0A804HHS6 Q9NZJ4 A0A804HLL1 ENST00000455470.6 H0Y6M8 ENST00000423156.2 A0A804HKY6 A0A804HLK7 ENST00000682775.1 ENST00000683210.1 A0A804HL98 A0A804HIU0 A0A804HK57 ENST00000684497.1 |