PTCHD4 report

Query

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I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
GABAergic neuron	9 studies	45% ± 23%	Explore
glutamatergic neuron	8 studies	35% ± 17%	Explore
interneuron	6 studies	43% ± 21%	Explore
endothelial cell	4 studies	28% ± 12%	Explore
retinal ganglion cell	4 studies	41% ± 21%	Explore
GABAergic interneuron	3 studies	39% ± 16%	Explore

II. Expression across tissues

sc-RNAseq dataData table

Name	Number of supported studies	Average coverage
brain	5 studies	37% ± 22%	Explore

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
thymus	98%	147.29	643 / 653	82%	11.76	498 / 605
kidney	90%	67.52	80 / 89	80%	4.84	722 / 901
prostate	95%	86.67	233 / 245	30%	0.70	152 / 502
brain	85%	34.44	2235 / 2642	35%	0.88	244 / 705
adrenal gland	63%	21.56	162 / 258	55%	1.98	127 / 230
lung	87%	69.76	501 / 578	22%	0.79	256 / 1155
breast	92%	53.60	422 / 459	16%	0.38	184 / 1118
bladder	95%	49.14	20 / 21	13%	0.42	65 / 504
uterus	94%	76.62	159 / 170	13%	0.50	59 / 459
skin	46%	49.79	824 / 1809	60%	4.48	285 / 472
blood vessel	96%	96.80	1283 / 1335	0%	0	0 / 0
adipose	88%	62.72	1057 / 1204	0%	0	0 / 0
heart	78%	37.13	668 / 861	0%	0	0 / 0
intestine	63%	33.51	613 / 966	10%	0.34	54 / 527
esophagus	68%	30.96	986 / 1445	4%	0.05	7 / 183
ovary	62%	28.59	111 / 180	5%	0.13	21 / 430
eye	0%	0	0 / 0	57%	3.06	46 / 80
pancreas	33%	8.85	108 / 328	15%	0.26	26 / 178
liver	28%	7.53	63 / 226	18%	0.71	75 / 406
stomach	34%	10.66	123 / 359	6%	0.20	16 / 286
muscle	38%	10.82	304 / 803	0%	0	0 / 0
spleen	12%	2.40	28 / 241	0%	0	0 / 0
tonsil	0%	0	0 / 0	7%	0.42	3 / 45
peripheral blood	1%	0.25	10 / 929	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
lymph node	0%	0	0 / 0	0%	0	0 / 29
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0
ureter	0%	0	0 / 0	0%	0	0 / 1