PCDHA6 | OmnibusX

sc-RNAseq data

Insufficient scRNA-seq data for expression of PCDHA6 at tissue level.

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
ovary	96%	34.42	173 / 180	22%	0.48	95 / 430
brain	93%	76.16	2461 / 2642	14%	0.54	102 / 705
breast	86%	32.07	396 / 459	19%	0.52	216 / 1118
uterus	98%	40.00	166 / 170	3%	0.07	15 / 459
kidney	92%	26.13	82 / 89	8%	0.18	70 / 901
pancreas	96%	33.10	314 / 328	2%	0.04	3 / 178
lung	85%	19.15	494 / 578	8%	0.19	93 / 1155
thymus	87%	18.63	567 / 653	4%	0.06	24 / 605
prostate	60%	8.86	146 / 245	14%	0.39	68 / 502
intestine	68%	11.57	661 / 966	0%	0.01	2 / 527
adipose	68%	12.68	822 / 1204	0%	0	0 / 0
blood vessel	63%	10.14	843 / 1335	0%	0	0 / 0
adrenal gland	37%	6.91	95 / 258	23%	0.82	52 / 230
skin	46%	6.44	829 / 1809	7%	0.14	32 / 472
esophagus	40%	5.15	579 / 1445	3%	0.07	5 / 183
stomach	39%	4.70	139 / 359	1%	0.03	3 / 286
bladder	29%	3.76	6 / 21	3%	0.07	17 / 504
spleen	28%	3.41	67 / 241	0%	0	0 / 0
heart	28%	3.57	239 / 861	0%	0	0 / 0
liver	4%	0.44	10 / 226	4%	0.08	17 / 406
muscle	3%	0.27	25 / 803	0%	0	0 / 0
eye	0%	0	0 / 0	3%	0.03	2 / 80
peripheral blood	2%	0.22	19 / 929	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
lymph node	0%	0	0 / 0	0%	0	0 / 29
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0
tonsil	0%	0	0 / 0	0%	0	0 / 45
ureter	0%	0	0 / 0	0%	0	0 / 1

GO_0007156	Biological process	homophilic cell adhesion via plasma membrane adhesion molecules
GO_0007155	Biological process	cell adhesion
GO_0007399	Biological process	nervous system development
GO_0005576	Cellular component	extracellular region
GO_0005886	Cellular component	plasma membrane
GO_0005509	Molecular function	calcium ion binding

Gene name	PCDHA6
Protein name	Protocadherin alpha-6 (PCDH-alpha-6)
Synonyms	CNRS2
Description	FUNCTION: Potential calcium-dependent cell-adhesion protein. May be involved in the establishment and maintenance of specific neuronal connections in the brain.
Accessions	ENST00000527624.1 [Q9UN73-2] ENST00000708303.1 [Q9UN73-2] ENST00000378126.4 [Q9UN73-3] ENST00000708302.1 [Q9UN73-1] ENST00000708301.1 [Q9UN73-3] Q9UN73 ENST00000529310.6 [Q9UN73-1]

PCDHA6 report