PCDH19 report

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I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
glutamatergic neuron	6 studies	34% ± 13%	Explore
oligodendrocyte precursor cell	5 studies	25% ± 7%	Explore
GABAergic neuron	4 studies	43% ± 15%	Explore
GABAergic interneuron	3 studies	23% ± 4%	Explore
interneuron	3 studies	29% ± 5%	Explore

II. Expression across tissues

sc-RNAseq dataData table

Name	Number of supported studies	Average coverage
brain	3 studies	36% ± 14%	Explore

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
brain	88%	860.26	2318 / 2642	95%	10.25	672 / 705
ovary	98%	351.49	177 / 180	82%	10.76	351 / 430
breast	100%	735.73	458 / 459	33%	3.79	368 / 1118
uterus	97%	272.13	165 / 170	27%	2.69	126 / 459
esophagus	80%	182.82	1150 / 1445	28%	3.89	51 / 183
bladder	95%	336.57	20 / 21	12%	1.09	58 / 504
adipose	99%	685.34	1197 / 1204	0%	0	0 / 0
intestine	87%	205.81	842 / 966	11%	0.89	59 / 527
prostate	66%	107.42	161 / 245	1%	0.02	4 / 502
thymus	63%	89.59	411 / 653	3%	0.24	21 / 605
skin	64%	142.99	1149 / 1809	2%	0.32	10 / 472
stomach	45%	91.60	161 / 359	13%	1.24	38 / 286
blood vessel	54%	109.37	724 / 1335	0%	0	0 / 0
muscle	52%	74.27	421 / 803	0%	0	0 / 0
lung	12%	14.32	68 / 578	28%	4.19	328 / 1155
heart	32%	40.97	278 / 861	0%	0	0 / 0
tonsil	0%	0	0 / 0	31%	1.59	14 / 45
adrenal gland	5%	7.05	14 / 258	23%	1.70	53 / 230
kidney	20%	23.16	18 / 89	1%	0.08	8 / 901
pancreas	2%	3.14	8 / 328	4%	0.19	7 / 178
spleen	3%	3.59	7 / 241	0%	0	0 / 0
liver	0%	0.37	1 / 226	1%	0.09	4 / 406
eye	0%	0	0 / 0	1%	0.05	1 / 80
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
lymph node	0%	0	0 / 0	0%	0	0 / 29
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
peripheral blood	0%	0	0 / 929	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0
ureter	0%	0	0 / 0	0%	0	0 / 1