Name | Number of supported studies  | Average coverage | |
|---|---|---|---|
| endothelial cell | 10 studies | 23% ± 7% | |
| capillary endothelial cell | 6 studies | 20% ± 5% | |
| squamous epithelial cell | 4 studies | 40% ± 14% | |
| epithelial cell | 4 studies | 21% ± 5% | |
| endothelial cell of artery | 4 studies | 21% ± 6% | |
| glutamatergic neuron | 3 studies | 29% ± 12% |
Insufficient scRNA-seq data for expression of PCDH1 at tissue level.
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
|---|---|---|---|---|---|---|
| intestine | 99% | 3323.40 | 959 / 966 | 99% | 76.76 | 520 / 527 |
| breast | 100% | 4926.30 | 459 / 459 | 97% | 63.28 | 1088 / 1118 |
| stomach | 100% | 3651.79 | 359 / 359 | 97% | 81.03 | 278 / 286 |
| prostate | 98% | 2397.56 | 239 / 245 | 98% | 55.36 | 494 / 502 |
| brain | 98% | 2557.54 | 2580 / 2642 | 97% | 41.61 | 683 / 705 |
| pancreas | 93% | 1702.29 | 305 / 328 | 99% | 93.34 | 176 / 178 |
| esophagus | 100% | 4002.80 | 1440 / 1445 | 91% | 75.05 | 166 / 183 |
| bladder | 95% | 1995.14 | 20 / 21 | 93% | 53.23 | 467 / 504 |
| thymus | 100% | 2815.80 | 652 / 653 | 84% | 33.29 | 508 / 605 |
| lung | 100% | 5867.33 | 578 / 578 | 84% | 36.29 | 966 / 1155 |
| uterus | 97% | 1797.43 | 165 / 170 | 82% | 40.10 | 377 / 459 |
| liver | 98% | 2122.85 | 221 / 226 | 76% | 21.89 | 309 / 406 |
| kidney | 100% | 3864.44 | 89 / 89 | 69% | 27.61 | 623 / 901 |
| skin | 72% | 3836.83 | 1305 / 1809 | 77% | 27.15 | 364 / 472 |
| ovary | 25% | 322.48 | 45 / 180 | 97% | 53.16 | 415 / 430 |
| adrenal gland | 34% | 340.60 | 88 / 258 | 72% | 30.27 | 165 / 230 |
| adipose | 100% | 4179.03 | 1204 / 1204 | 0% | 0 | 0 / 0 |
| ureter | 0% | 0 | 0 / 0 | 100% | 36.44 | 1 / 1 |
| heart | 92% | 1716.52 | 796 / 861 | 0% | 0 | 0 / 0 |
| tonsil | 0% | 0 | 0 / 0 | 89% | 25.68 | 40 / 45 |
| blood vessel | 88% | 1951.52 | 1171 / 1335 | 0% | 0 | 0 / 0 |
| muscle | 45% | 407.19 | 365 / 803 | 0% | 0 | 0 / 0 |
| spleen | 12% | 95.42 | 30 / 241 | 0% | 0 | 0 / 0 |
| eye | 0% | 0 | 0 / 0 | 5% | 0.71 | 4 / 80 |
| peripheral blood | 2% | 14.21 | 15 / 929 | 0% | 0 | 0 / 0 |
| abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| lymph node | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 29 |
| nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| GO_0007156 | Biological process | homophilic cell adhesion via plasma membrane adhesion molecules |
| GO_0007155 | Biological process | cell adhesion |
| GO_0007399 | Biological process | nervous system development |
| GO_0007267 | Biological process | cell-cell signaling |
| GO_0005911 | Cellular component | cell-cell junction |
| GO_0043231 | Cellular component | intracellular membrane-bounded organelle |
| GO_0005730 | Cellular component | nucleolus |
| GO_0030054 | Cellular component | cell junction |
| GO_0005654 | Cellular component | nucleoplasm |
| GO_0005886 | Cellular component | plasma membrane |
| GO_0005509 | Molecular function | calcium ion binding |
| Gene name | PCDH1 |
| Protein name | Protocadherin 1 Protocadherin-1 (Cadherin-like protein 1) (Protocadherin-42) (PC42) |
| Synonyms | |
| Description | FUNCTION: May be involved in cell-cell interaction processes and in cell adhesion. |
| Accessions | H0Y9I5 H0Y9F5 ENST00000515351.1 Q08174 ENST00000287008.8 [Q08174-2] ENST00000505937.2 D6RAX3 D6RBG2 ENST00000503492.5 ENST00000514773.1 ENST00000394536.4 [Q08174-1] |
