PCARE report

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I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
retinal cone cell	4 studies	18% ± 2%	Explore

II. Expression across tissues

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
thymus	93%	37.04	606 / 653	12%	0.19	71 / 605
heart	91%	104.81	785 / 861	0%	0	0 / 0
ovary	89%	86.26	161 / 180	1%	0.02	4 / 430
kidney	90%	142.79	80 / 89	0%	0.01	4 / 901
muscle	82%	42.05	660 / 803	0%	0	0 / 0
brain	79%	35.53	2096 / 2642	2%	0.04	14 / 705
lung	73%	31.39	420 / 578	5%	0.11	59 / 1155
bladder	76%	18.67	16 / 21	0%	0.01	2 / 504
skin	65%	23.56	1184 / 1809	2%	0.03	8 / 472
esophagus	64%	18.52	929 / 1445	3%	0.03	5 / 183
prostate	67%	23.98	163 / 245	0%	0.00	1 / 502
stomach	55%	21.82	197 / 359	0%	0	0 / 286
breast	49%	11.95	227 / 459	3%	0.05	31 / 1118
intestine	49%	9.67	475 / 966	0%	0.01	1 / 527
adipose	49%	12.52	593 / 1204	0%	0	0 / 0
uterus	15%	3.83	26 / 170	2%	0.05	11 / 459
adrenal gland	11%	1.70	29 / 258	2%	0.04	5 / 230
blood vessel	11%	2.44	147 / 1335	0%	0	0 / 0
spleen	11%	2.09	26 / 241	0%	0	0 / 0
pancreas	7%	0.90	23 / 328	0%	0	0 / 178
eye	0%	0	0 / 0	4%	0.64	3 / 80
peripheral blood	1%	0.15	10 / 929	0%	0	0 / 0
liver	0%	0.05	1 / 226	0%	0.00	1 / 406
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
lymph node	0%	0	0 / 0	0%	0	0 / 29
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0
tonsil	0%	0	0 / 0	0%	0	0 / 45
ureter	0%	0	0 / 0	0%	0	0 / 1