Name | Number of supported studies | Average coverage | |
---|---|---|---|
microglial cell | 10 studies | 41% ± 12% | |
oligodendrocyte | 9 studies | 37% ± 13% | |
astrocyte | 5 studies | 30% ± 6% | |
retinal cone cell | 4 studies | 26% ± 5% | |
goblet cell | 3 studies | 26% ± 7% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 5 studies | 30% ± 8% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
brain | 95% | 10326.55 | 2521 / 2642 | 98% | 99.74 | 692 / 705 |
breast | 38% | 1858.06 | 173 / 459 | 83% | 56.32 | 933 / 1118 |
intestine | 39% | 4909.52 | 376 / 966 | 71% | 26.91 | 373 / 527 |
ureter | 0% | 0 | 0 / 0 | 100% | 11.52 | 1 / 1 |
muscle | 100% | 36574.49 | 801 / 803 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 96% | 63.75 | 77 / 80 |
peripheral blood | 82% | 16317.45 | 764 / 929 | 0% | 0 | 0 / 0 |
spleen | 78% | 3307.94 | 188 / 241 | 0% | 0 | 0 / 0 |
lung | 32% | 760.55 | 186 / 578 | 39% | 8.33 | 447 / 1155 |
stomach | 2% | 51.06 | 7 / 359 | 65% | 19.16 | 187 / 286 |
kidney | 16% | 488.03 | 14 / 89 | 44% | 6.59 | 392 / 901 |
skin | 37% | 1198.30 | 667 / 1809 | 22% | 4.08 | 105 / 472 |
ovary | 0% | 0 | 0 / 180 | 56% | 10.60 | 242 / 430 |
lymph node | 0% | 0 | 0 / 0 | 52% | 21.43 | 15 / 29 |
pancreas | 1% | 22.19 | 2 / 328 | 50% | 6.89 | 89 / 178 |
esophagus | 1% | 14.19 | 10 / 1445 | 36% | 16.55 | 65 / 183 |
uterus | 1% | 15.36 | 1 / 170 | 33% | 9.90 | 151 / 459 |
bladder | 0% | 0 | 0 / 21 | 33% | 9.52 | 168 / 504 |
tonsil | 0% | 0 | 0 / 0 | 27% | 5.93 | 12 / 45 |
prostate | 5% | 85.60 | 12 / 245 | 20% | 2.41 | 101 / 502 |
thymus | 1% | 14.50 | 4 / 653 | 4% | 0.49 | 25 / 605 |
liver | 0% | 0 | 0 / 226 | 5% | 0.67 | 19 / 406 |
adipose | 3% | 72.85 | 35 / 1204 | 0% | 0 | 0 / 0 |
adrenal gland | 0% | 0 | 0 / 258 | 3% | 0.88 | 6 / 230 |
blood vessel | 1% | 36.80 | 8 / 1335 | 0% | 0 | 0 / 0 |
heart | 0% | 2.02 | 1 / 861 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0070100 | Biological process | negative regulation of chemokine-mediated signaling pathway |
GO_1990830 | Biological process | cellular response to leukemia inhibitory factor |
GO_0006338 | Biological process | chromatin remodeling |
GO_1901624 | Biological process | negative regulation of lymphocyte chemotaxis |
GO_0021762 | Biological process | substantia nigra development |
GO_0030520 | Biological process | estrogen receptor signaling pathway |
GO_0045815 | Biological process | transcription initiation-coupled chromatin remodeling |
GO_0035578 | Cellular component | azurophil granule lumen |
GO_0005576 | Cellular component | extracellular region |
GO_0000791 | Cellular component | euchromatin |
GO_0070062 | Cellular component | extracellular exosome |
GO_0005829 | Cellular component | cytosol |
GO_0005737 | Cellular component | cytoplasm |
GO_0005634 | Cellular component | nucleus |
GO_0042803 | Molecular function | protein homodimerization activity |
GO_0030331 | Molecular function | nuclear estrogen receptor binding |
GO_0140798 | Molecular function | histone H3R26 arginine deiminase activity |
GO_0140794 | Molecular function | histone arginine deiminase activity |
GO_0005509 | Molecular function | calcium ion binding |
GO_0004668 | Molecular function | protein-arginine deiminase activity |
Gene name | PADI2 |
Protein name | Protein-arginine deiminase type-2 (EC 3.5.3.15) (PAD-H19) (Peptidylarginine deiminase II) (Protein-arginine deiminase type II) |
Synonyms | KIAA0994 PDI2 PAD2 |
Description | FUNCTION: Catalyzes the deimination of arginine residues of proteins. . |
Accessions | ENST00000375486.9 [Q9Y2J8-1] ENST00000707396.1 [Q9Y2J8-1] Q9Y2J8 ENST00000707399.1 [Q9Y2J8-2] ENST00000375481.1 [Q9Y2J8-2] |