Insufficient scRNA-seq data for expression of OPTC at single-cell level.
Insufficient scRNA-seq data for expression of OPTC at tissue level.
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
ovary | 95% | 8.97 | 171 / 180 | 6% | 0.33 | 24 / 430 |
uterus | 96% | 18.41 | 164 / 170 | 3% | 0.09 | 15 / 459 |
brain | 68% | 3.51 | 1786 / 2642 | 27% | 0.74 | 187 / 705 |
prostate | 84% | 8.14 | 206 / 245 | 0% | 0.00 | 2 / 502 |
blood vessel | 83% | 6.00 | 1114 / 1335 | 0% | 0 | 0 / 0 |
bladder | 81% | 10.00 | 17 / 21 | 1% | 0.04 | 6 / 504 |
intestine | 79% | 13.39 | 764 / 966 | 1% | 0.02 | 5 / 527 |
esophagus | 71% | 6.72 | 1025 / 1445 | 1% | 0.01 | 2 / 183 |
breast | 71% | 3.61 | 324 / 459 | 0% | 0.01 | 5 / 1118 |
adipose | 70% | 4.10 | 843 / 1204 | 0% | 0 | 0 / 0 |
skin | 63% | 3.45 | 1148 / 1809 | 1% | 0.01 | 3 / 472 |
stomach | 46% | 3.14 | 165 / 359 | 2% | 0.02 | 5 / 286 |
lung | 46% | 2.18 | 263 / 578 | 1% | 0.02 | 13 / 1155 |
heart | 39% | 1.44 | 335 / 861 | 0% | 0 | 0 / 0 |
spleen | 37% | 1.37 | 89 / 241 | 0% | 0 | 0 / 0 |
thymus | 25% | 0.73 | 162 / 653 | 3% | 0.06 | 17 / 605 |
kidney | 27% | 0.83 | 24 / 89 | 0% | 0.00 | 2 / 901 |
muscle | 20% | 0.60 | 159 / 803 | 0% | 0 | 0 / 0 |
adrenal gland | 15% | 0.43 | 38 / 258 | 4% | 0.08 | 10 / 230 |
pancreas | 16% | 3.24 | 53 / 328 | 1% | 0.01 | 1 / 178 |
eye | 0% | 0 | 0 / 0 | 10% | 11.92 | 8 / 80 |
liver | 9% | 0.22 | 20 / 226 | 0% | 0 | 0 / 406 |
peripheral blood | 2% | 0.04 | 16 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 29 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 45 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0001525 | Biological process | angiogenesis |
GO_0030199 | Biological process | collagen fibril organization |
GO_0060348 | Biological process | bone development |
GO_0061975 | Biological process | articular cartilage development |
GO_0016525 | Biological process | negative regulation of angiogenesis |
GO_0005576 | Cellular component | extracellular region |
GO_0031012 | Cellular component | extracellular matrix |
GO_0005201 | Molecular function | extracellular matrix structural constituent |
Gene name | OPTC |
Protein name | Opticin Opticin (Oculoglycan) |
Synonyms | OPT |
Description | FUNCTION: Inhibits angiogenesis in the vitreous humor of the eye, and therefore represses neovascularization (By similarity). Binds collagen fibrils (By similarity). May be involved in collagen fiber organization via regulation of other members of the small leucine-rich repeat proteoglycan superfamily (By similarity). . |
Accessions | ENST00000448911.1 Q5T2G3 Q66MN3 Q9UBM4 ENST00000367222.7 |