Name | Number of supported studies | Average coverage | |
---|---|---|---|
macrophage | 5 studies | 20% ± 2% | |
epithelial cell | 4 studies | 20% ± 6% | |
astrocyte | 4 studies | 32% ± 10% | |
oligodendrocyte | 4 studies | 21% ± 4% | |
GABAergic neuron | 3 studies | 34% ± 2% | |
glutamatergic neuron | 3 studies | 42% ± 6% | |
microglial cell | 3 studies | 20% ± 3% | |
oligodendrocyte precursor cell | 3 studies | 25% ± 4% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 4 studies | 34% ± 8% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
bladder | 100% | 461.05 | 21 / 21 | 100% | 5.87 | 504 / 504 |
breast | 100% | 465.91 | 459 / 459 | 100% | 6.80 | 1118 / 1118 |
esophagus | 100% | 357.92 | 1445 / 1445 | 100% | 7.57 | 183 / 183 |
intestine | 100% | 498.75 | 966 / 966 | 100% | 5.91 | 527 / 527 |
prostate | 100% | 485.79 | 245 / 245 | 100% | 6.28 | 502 / 502 |
stomach | 100% | 409.92 | 359 / 359 | 100% | 6.28 | 286 / 286 |
uterus | 100% | 502.49 | 170 / 170 | 100% | 6.02 | 459 / 459 |
lung | 100% | 493.80 | 578 / 578 | 100% | 7.28 | 1154 / 1155 |
thymus | 100% | 472.98 | 653 / 653 | 100% | 5.60 | 604 / 605 |
brain | 100% | 318.45 | 2636 / 2642 | 100% | 5.26 | 705 / 705 |
ovary | 100% | 483.19 | 180 / 180 | 100% | 6.01 | 429 / 430 |
liver | 100% | 293.85 | 226 / 226 | 100% | 3.10 | 404 / 406 |
kidney | 100% | 345.02 | 89 / 89 | 99% | 5.10 | 894 / 901 |
pancreas | 100% | 310.23 | 327 / 328 | 99% | 5.05 | 177 / 178 |
adrenal gland | 100% | 474.81 | 258 / 258 | 99% | 4.08 | 228 / 230 |
skin | 100% | 459.83 | 1808 / 1809 | 97% | 5.12 | 460 / 472 |
blood vessel | 100% | 447.09 | 1335 / 1335 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 5.31 | 29 / 29 |
spleen | 100% | 601.37 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 6.38 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 2.63 | 1 / 1 |
adipose | 100% | 444.11 | 1203 / 1204 | 0% | 0 | 0 / 0 |
peripheral blood | 99% | 499.56 | 917 / 929 | 0% | 0 | 0 / 0 |
heart | 98% | 273.05 | 844 / 861 | 0% | 0 | 0 / 0 |
muscle | 87% | 115.70 | 701 / 803 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 65% | 1.41 | 52 / 80 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0002127 | Biological process | tRNA wobble base cytosine methylation |
GO_0070129 | Biological process | regulation of mitochondrial translation |
GO_0031167 | Biological process | rRNA methylation |
GO_0005762 | Cellular component | mitochondrial large ribosomal subunit |
GO_0005759 | Cellular component | mitochondrial matrix |
GO_0005739 | Cellular component | mitochondrion |
GO_0000049 | Molecular function | tRNA binding |
GO_0016428 | Molecular function | tRNA (cytidine-5-)-methyltransferase activity |
GO_0008168 | Molecular function | methyltransferase activity |
Gene name | NSUN3 |
Protein name | tRNA (cytosine(34)-C(5))-methyltransferase, mitochondrial (EC 2.1.1.-) (NOL1/NOP2/Sun domain family member 3) NOP2/Sun RNA methyltransferase 3 |
Synonyms | MSTP077 UG0651E06 |
Description | FUNCTION: Mitochondrial tRNA methyltransferase that mediates methylation of cytosine to 5-methylcytosine (m5C) at position 34 of mt-tRNA(Met) . mt-tRNA(Met) methylation at cytosine(34) takes place at the wobble position of the anticodon and initiates the formation of 5-formylcytosine (f(5)c) at this position . mt-tRNA(Met) containing the f(5)c modification at the wobble position enables recognition of the AUA codon in addition to the AUG codon, expanding codon recognition in mitochondrial translation . . |
Accessions | ENST00000483378.1 ENST00000314622.9 Q9H649 F8WF52 |