NME9 report

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I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
ciliated cell	11 studies	28% ± 11%	Explore
oligodendrocyte precursor cell	8 studies	35% ± 15%	Explore
astrocyte	4 studies	31% ± 6%	Explore
glutamatergic neuron	4 studies	46% ± 16%	Explore
oligodendrocyte	4 studies	25% ± 3%	Explore
endothelial cell	3 studies	22% ± 7%	Explore
GABAergic neuron	3 studies	42% ± 6%	Explore
ependymal cell	3 studies	44% ± 12%	Explore
interneuron	3 studies	35% ± 14%	Explore

II. Expression across tissues

sc-RNAseq dataData table

Name	Number of supported studies	Average coverage
brain	5 studies	35% ± 13%	Explore

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
brain	100%	288.85	2641 / 2642	92%	2.74	652 / 705
thymus	100%	114.99	652 / 653	47%	0.77	284 / 605
kidney	90%	64.17	80 / 89	41%	1.01	370 / 901
ovary	96%	68.72	173 / 180	30%	0.75	129 / 430
pancreas	95%	65.13	310 / 328	24%	0.42	42 / 178
adrenal gland	91%	64.36	235 / 258	27%	0.38	61 / 230
lung	97%	185.09	562 / 578	19%	0.54	220 / 1155
prostate	94%	78.84	231 / 245	13%	0.23	65 / 502
uterus	91%	85.36	154 / 170	15%	0.45	67 / 459
breast	95%	76.15	434 / 459	4%	0.12	47 / 1118
muscle	96%	141.29	772 / 803	0%	0	0 / 0
intestine	88%	58.77	848 / 966	4%	0.10	23 / 527
esophagus	76%	47.95	1097 / 1445	15%	0.25	28 / 183
bladder	86%	49.05	18 / 21	5%	0.15	26 / 504
skin	90%	67.09	1625 / 1809	0%	0.00	1 / 472
adipose	87%	60.70	1044 / 1204	0%	0	0 / 0
stomach	77%	44.20	278 / 359	5%	0.09	14 / 286
spleen	82%	48.22	197 / 241	0%	0	0 / 0
blood vessel	80%	48.02	1069 / 1335	0%	0	0 / 0
heart	59%	28.44	504 / 861	0%	0	0 / 0
liver	21%	7.84	47 / 226	4%	0.10	18 / 406
peripheral blood	23%	10.74	217 / 929	0%	0	0 / 0
eye	0%	0	0 / 0	1%	0.03	1 / 80
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
lymph node	0%	0	0 / 0	0%	0	0 / 29
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0
tonsil	0%	0	0 / 0	0%	0	0 / 45
ureter	0%	0	0 / 0	0%	0	0 / 1