NIM1K report

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I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
oligodendrocyte precursor cell	9 studies	23% ± 8%	Explore
astrocyte	8 studies	29% ± 13%	Explore
glutamatergic neuron	7 studies	40% ± 22%	Explore
GABAergic neuron	5 studies	40% ± 15%	Explore
interneuron	3 studies	44% ± 18%	Explore

II. Expression across tissues

sc-RNAseq dataData table

Name	Number of supported studies	Average coverage
brain	6 studies	36% ± 18%	Explore

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
brain	100%	878.09	2641 / 2642	100%	24.28	702 / 705
adrenal gland	61%	81.26	157 / 258	88%	7.05	203 / 230
ureter	0%	0	0 / 0	100%	1.53	1 / 1
lung	46%	111.01	265 / 578	40%	1.07	457 / 1155
stomach	72%	101.92	259 / 359	5%	0.10	14 / 286
esophagus	55%	93.28	789 / 1445	21%	0.36	39 / 183
skin	31%	34.27	560 / 1809	44%	1.56	210 / 472
prostate	62%	83.87	153 / 245	9%	0.13	45 / 502
bladder	48%	55.33	10 / 21	23%	0.46	115 / 504
intestine	62%	120.26	601 / 966	4%	0.09	19 / 527
kidney	15%	16.52	13 / 89	40%	0.94	358 / 901
thymus	22%	22.90	145 / 653	19%	0.50	112 / 605
uterus	14%	17.11	24 / 170	22%	0.71	100 / 459
breast	18%	18.61	82 / 459	18%	0.70	201 / 1118
pancreas	1%	0.58	2 / 328	33%	0.95	58 / 178
eye	0%	0	0 / 0	25%	0.40	20 / 80
tonsil	0%	0	0 / 0	20%	0.47	9 / 45
heart	18%	21.49	157 / 861	0%	0	0 / 0
adipose	18%	23.55	217 / 1204	0%	0	0 / 0
peripheral blood	17%	43.70	162 / 929	0%	0	0 / 0
blood vessel	12%	18.64	163 / 1335	0%	0	0 / 0
muscle	11%	30.45	87 / 803	0%	0	0 / 0
ovary	8%	11.32	14 / 180	2%	0.06	10 / 430
liver	3%	4.74	7 / 226	6%	0.10	24 / 406
lymph node	0%	0	0 / 0	7%	0.26	2 / 29
spleen	1%	0.85	2 / 241	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0