Name | Number of supported studies | Average coverage | |
---|---|---|---|
macrophage | 9 studies | 22% ± 5% | |
endothelial cell | 8 studies | 21% ± 7% | |
fibroblast | 8 studies | 19% ± 3% | |
oligodendrocyte | 8 studies | 30% ± 13% | |
adipocyte | 6 studies | 27% ± 10% | |
natural killer cell | 5 studies | 20% ± 4% | |
epithelial cell | 5 studies | 34% ± 13% | |
ciliated cell | 5 studies | 22% ± 6% | |
GABAergic neuron | 5 studies | 35% ± 16% | |
microglial cell | 5 studies | 22% ± 4% | |
B cell | 4 studies | 22% ± 4% | |
CD8-positive, alpha-beta T cell | 4 studies | 16% ± 1% | |
astrocyte | 4 studies | 24% ± 3% | |
glutamatergic neuron | 4 studies | 46% ± 16% | |
plasmacytoid dendritic cell | 4 studies | 22% ± 4% | |
CD4-positive, alpha-beta T cell | 3 studies | 16% ± 1% | |
classical monocyte | 3 studies | 22% ± 7% | |
hematopoietic precursor cell | 3 studies | 28% ± 16% | |
amacrine cell | 3 studies | 33% ± 5% | |
retinal bipolar neuron | 3 studies | 21% ± 4% | |
oligodendrocyte precursor cell | 3 studies | 30% ± 1% | |
dendritic cell | 3 studies | 27% ± 11% | |
club cell | 3 studies | 19% ± 3% | |
alveolar macrophage | 3 studies | 23% ± 6% | |
type I pneumocyte | 3 studies | 17% ± 1% | |
basal cell | 3 studies | 34% ± 10% | |
transit amplifying cell | 3 studies | 27% ± 12% | |
interneuron | 3 studies | 37% ± 20% | |
neuron | 3 studies | 38% ± 6% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 1217.71 | 1445 / 1445 | 100% | 13.34 | 183 / 183 |
breast | 100% | 2275.26 | 459 / 459 | 100% | 19.03 | 1117 / 1118 |
lung | 100% | 2006.13 | 577 / 578 | 100% | 15.01 | 1155 / 1155 |
stomach | 100% | 1554.12 | 359 / 359 | 100% | 18.99 | 285 / 286 |
intestine | 100% | 1876.40 | 966 / 966 | 100% | 19.68 | 525 / 527 |
bladder | 100% | 1708.43 | 21 / 21 | 100% | 16.16 | 502 / 504 |
ovary | 100% | 2548.09 | 180 / 180 | 100% | 10.17 | 428 / 430 |
thymus | 100% | 2892.50 | 653 / 653 | 100% | 18.97 | 602 / 605 |
kidney | 100% | 1790.70 | 89 / 89 | 99% | 19.44 | 895 / 901 |
prostate | 100% | 1712.29 | 245 / 245 | 99% | 11.94 | 498 / 502 |
brain | 99% | 1215.56 | 2620 / 2642 | 100% | 13.82 | 705 / 705 |
uterus | 100% | 2056.88 | 170 / 170 | 99% | 13.83 | 454 / 459 |
pancreas | 99% | 1285.95 | 326 / 328 | 99% | 16.48 | 177 / 178 |
skin | 100% | 1391.78 | 1808 / 1809 | 99% | 21.12 | 466 / 472 |
adrenal gland | 100% | 1803.19 | 258 / 258 | 97% | 15.88 | 224 / 230 |
liver | 100% | 1482.72 | 226 / 226 | 94% | 9.51 | 382 / 406 |
adipose | 100% | 2428.72 | 1204 / 1204 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 14.59 | 29 / 29 |
spleen | 100% | 2471.20 | 241 / 241 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 100% | 3.05 | 1 / 1 |
blood vessel | 100% | 1684.10 | 1334 / 1335 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 98% | 9.68 | 44 / 45 |
muscle | 97% | 652.91 | 775 / 803 | 0% | 0 | 0 / 0 |
heart | 94% | 829.61 | 808 / 861 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 93% | 11.94 | 74 / 80 |
peripheral blood | 76% | 953.21 | 708 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0000209 | Biological process | protein polyubiquitination |
GO_0043161 | Biological process | proteasome-mediated ubiquitin-dependent protein catabolic process |
GO_0017148 | Biological process | negative regulation of translation |
GO_0035578 | Cellular component | azurophil granule lumen |
GO_0005576 | Cellular component | extracellular region |
GO_0061630 | Molecular function | ubiquitin protein ligase activity |
GO_0030371 | Molecular function | translation repressor activity |
Gene name | NHLRC3 |
Protein name | NHL repeat containing 3 NHL repeat-containing protein 3 |
Synonyms | hCG_1642455 RP11-50D16.3 |
Description | |
Accessions | Q5JS37 C9J973 ENST00000379599.6 [Q5JS37-2] ENST00000470258.5 ENST00000379600.8 [Q5JS37-1] |