NCMAP report

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I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
brush cell	4 studies	47% ± 27%	Explore

II. Expression across tissues

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
pancreas	100%	966.79	328 / 328	89%	14.31	159 / 178
thymus	98%	324.36	641 / 653	84%	16.74	506 / 605
stomach	76%	617.60	272 / 359	59%	3.42	169 / 286
prostate	86%	307.22	210 / 245	46%	2.11	232 / 502
liver	72%	171.90	162 / 226	56%	3.66	228 / 406
lung	61%	278.49	355 / 578	63%	6.70	732 / 1155
intestine	38%	68.91	368 / 966	58%	3.49	304 / 527
breast	62%	193.63	285 / 459	33%	4.49	368 / 1118
kidney	71%	231.75	63 / 89	21%	1.67	190 / 901
bladder	33%	44.29	7 / 21	37%	2.37	184 / 504
esophagus	13%	35.09	195 / 1445	38%	2.52	69 / 183
skin	34%	45.31	607 / 1809	6%	0.72	27 / 472
ovary	3%	5.29	6 / 180	36%	1.68	154 / 430
uterus	5%	5.72	9 / 170	26%	2.88	120 / 459
brain	13%	26.02	342 / 2642	9%	0.92	64 / 705
adipose	16%	61.87	192 / 1204	0%	0	0 / 0
blood vessel	13%	44.13	172 / 1335	0%	0	0 / 0
muscle	10%	16.08	82 / 803	0%	0	0 / 0
heart	7%	9.26	61 / 861	0%	0	0 / 0
tonsil	0%	0	0 / 0	7%	0.24	3 / 45
adrenal gland	3%	3.69	9 / 258	1%	0.11	3 / 230
spleen	2%	1.82	6 / 241	0%	0	0 / 0
peripheral blood	1%	0.84	5 / 929	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
eye	0%	0	0 / 0	0%	0	0 / 80
gingiva	0%	0	0 / 0	0%	0	0 / 0
lymph node	0%	0	0 / 0	0%	0	0 / 29
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0
ureter	0%	0	0 / 0	0%	0	0 / 1