MIPEP report

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I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
ciliated cell	11 studies	31% ± 13%	Explore
oligodendrocyte	8 studies	23% ± 9%	Explore
epithelial cell	5 studies	21% ± 2%	Explore
GABAergic neuron	5 studies	38% ± 18%	Explore
astrocyte	4 studies	30% ± 12%	Explore
glutamatergic neuron	4 studies	50% ± 20%	Explore
endothelial cell	3 studies	27% ± 6%	Explore
transit amplifying cell	3 studies	26% ± 9%	Explore
interneuron	3 studies	46% ± 20%	Explore

II. Expression across tissues

sc-RNAseq dataData table

Name	Number of supported studies	Average coverage
brain	5 studies	40% ± 14%	Explore
liver	3 studies	18% ± 3%	Explore

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
intestine	100%	870.75	966 / 966	100%	39.33	526 / 527
breast	100%	830.18	459 / 459	100%	33.52	1115 / 1118
skin	100%	1986.29	1809 / 1809	99%	28.86	469 / 472
prostate	100%	1112.35	244 / 245	100%	89.01	500 / 502
stomach	100%	741.70	358 / 359	99%	34.31	284 / 286
kidney	100%	1355.96	89 / 89	99%	28.70	892 / 901
uterus	100%	744.69	170 / 170	98%	19.23	451 / 459
pancreas	98%	588.80	322 / 328	100%	18.20	178 / 178
thymus	100%	907.05	652 / 653	98%	18.66	594 / 605
lung	98%	787.58	569 / 578	99%	17.11	1149 / 1155
bladder	100%	868.14	21 / 21	98%	24.32	493 / 504
ovary	99%	661.68	178 / 180	99%	17.22	425 / 430
esophagus	100%	989.97	1442 / 1445	98%	18.04	179 / 183
brain	92%	390.61	2419 / 2642	99%	12.98	695 / 705
adrenal gland	100%	1210.06	258 / 258	84%	9.62	194 / 230
liver	96%	510.63	217 / 226	82%	9.87	333 / 406
tonsil	0%	0	0 / 0	100%	19.59	45 / 45
ureter	0%	0	0 / 0	100%	10.15	1 / 1
muscle	100%	914.15	802 / 803	0%	0	0 / 0
adipose	100%	694.26	1202 / 1204	0%	0	0 / 0
spleen	100%	566.75	240 / 241	0%	0	0 / 0
blood vessel	99%	541.47	1322 / 1335	0%	0	0 / 0
eye	0%	0	0 / 0	99%	19.72	79 / 80
heart	97%	1617.10	834 / 861	0%	0	0 / 0
lymph node	0%	0	0 / 0	93%	13.36	27 / 29
peripheral blood	27%	336.83	247 / 929	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0