MINDY4 report

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I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
ciliated cell	3 studies	27% ± 3%	Explore

II. Expression across tissues

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
prostate	100%	1048.71	244 / 245	11%	0.17	55 / 502
uterus	100%	897.65	170 / 170	10%	0.17	44 / 459
thymus	100%	1130.86	653 / 653	8%	0.15	51 / 605
adrenal gland	100%	562.52	258 / 258	7%	0.09	16 / 230
ovary	100%	1300.99	180 / 180	6%	0.08	24 / 430
lung	100%	1633.48	578 / 578	4%	0.10	49 / 1155
kidney	100%	692.15	89 / 89	4%	0.08	38 / 901
breast	100%	729.64	459 / 459	4%	0.08	47 / 1118
bladder	100%	672.33	21 / 21	4%	0.09	20 / 504
intestine	96%	555.84	926 / 966	4%	0.06	23 / 527
adipose	100%	961.53	1204 / 1204	0%	0	0 / 0
blood vessel	100%	1363.38	1334 / 1335	0%	0	0 / 0
esophagus	96%	894.43	1390 / 1445	3%	0.05	6 / 183
skin	98%	427.70	1774 / 1809	1%	0.02	6 / 472
pancreas	91%	279.70	298 / 328	7%	0.09	12 / 178
heart	93%	402.90	804 / 861	0%	0	0 / 0
brain	74%	283.22	1946 / 2642	6%	0.10	43 / 705
stomach	74%	437.84	264 / 359	3%	0.08	10 / 286
spleen	63%	160.46	152 / 241	0%	0	0 / 0
muscle	63%	162.11	503 / 803	0%	0	0 / 0
liver	54%	140.24	122 / 226	7%	0.10	27 / 406
peripheral blood	16%	59.73	151 / 929	0%	0	0 / 0
lymph node	0%	0	0 / 0	3%	0.13	1 / 29
tonsil	0%	0	0 / 0	2%	0.03	1 / 45
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
eye	0%	0	0 / 0	0%	0	0 / 80
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0
ureter	0%	0	0 / 0	0%	0	0 / 1