MATCAP2 report

Query

Invalid input gene. Please select from the suggestions.

I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
ciliated cell	3 studies	27% ± 8%	Explore
GABAergic neuron	3 studies	38% ± 4%	Explore
glutamatergic neuron	3 studies	43% ± 7%	Explore

II. Expression across tissues

sc-RNAseq dataData table

Name	Number of supported studies	Average coverage
brain	4 studies	28% ± 8%	Explore

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
adrenal gland	100%	1351.36	258 / 258	96%	8.15	220 / 230
prostate	99%	444.74	243 / 245	94%	5.89	470 / 502
brain	99%	1035.23	2603 / 2642	93%	5.60	657 / 705
esophagus	97%	486.67	1402 / 1445	92%	7.28	169 / 183
kidney	100%	708.39	89 / 89	87%	6.78	780 / 901
pancreas	100%	795.68	328 / 328	87%	5.01	154 / 178
ovary	100%	1293.94	180 / 180	83%	4.51	357 / 430
uterus	98%	405.77	166 / 170	80%	4.48	367 / 459
stomach	100%	1389.10	359 / 359	76%	4.16	217 / 286
lung	84%	292.30	486 / 578	92%	6.27	1059 / 1155
thymus	99%	484.64	649 / 653	72%	2.54	433 / 605
intestine	87%	319.73	838 / 966	79%	4.01	415 / 527
breast	70%	236.62	320 / 459	95%	8.15	1067 / 1118
liver	100%	484.51	225 / 226	56%	2.68	228 / 406
bladder	76%	204.95	16 / 21	64%	3.28	322 / 504
skin	80%	479.62	1445 / 1809	58%	2.71	273 / 472
blood vessel	92%	300.87	1232 / 1335	0%	0	0 / 0
heart	76%	188.23	656 / 861	0%	0	0 / 0
tonsil	0%	0	0 / 0	60%	2.39	27 / 45
muscle	49%	107.32	392 / 803	0%	0	0 / 0
adipose	35%	82.79	427 / 1204	0%	0	0 / 0
spleen	17%	30.75	42 / 241	0%	0	0 / 0
eye	0%	0	0 / 0	5%	0.15	4 / 80
lymph node	0%	0	0 / 0	3%	0.09	1 / 29
peripheral blood	0%	0.33	2 / 929	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0
ureter	0%	0	0 / 0	0%	0	0 / 1