LY6K report

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I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
extravillous trophoblast	3 studies	48% ± 15%	Explore

II. Expression across tissues

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
breast	97%	129.69	445 / 459	36%	1.95	398 / 1118
skin	99%	475.81	1797 / 1809	31%	2.64	145 / 472
uterus	35%	16.14	60 / 170	81%	11.78	372 / 459
esophagus	52%	121.12	751 / 1445	63%	5.08	116 / 183
tonsil	0%	0	0 / 0	100%	12.69	45 / 45
ureter	0%	0	0 / 0	100%	29.95	1 / 1
lung	41%	17.74	235 / 578	58%	4.77	667 / 1155
bladder	38%	24.33	8 / 21	59%	4.60	297 / 504
adipose	96%	95.11	1151 / 1204	0%	0	0 / 0
muscle	85%	54.03	679 / 803	0%	0	0 / 0
ovary	37%	13.11	66 / 180	45%	2.44	192 / 430
brain	80%	35.16	2113 / 2642	0%	0	0 / 705
prostate	53%	26.30	130 / 245	22%	1.07	109 / 502
thymus	62%	26.42	404 / 653	12%	1.29	75 / 605
kidney	53%	32.72	47 / 89	4%	0.20	36 / 901
blood vessel	51%	22.27	686 / 1335	0%	0	0 / 0
stomach	40%	18.08	142 / 359	11%	0.48	32 / 286
heart	44%	17.18	383 / 861	0%	0	0 / 0
pancreas	3%	0.99	10 / 328	26%	1.85	46 / 178
intestine	17%	6.27	167 / 966	7%	0.44	38 / 527
eye	0%	0	0 / 0	11%	0.91	9 / 80
liver	1%	0.26	2 / 226	5%	0.54	22 / 406
adrenal gland	2%	0.77	5 / 258	3%	0.12	7 / 230
spleen	5%	1.38	11 / 241	0%	0	0 / 0
peripheral blood	3%	0.91	30 / 929	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
lymph node	0%	0	0 / 0	0%	0	0 / 29
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0