LRRC9 report

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I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
GABAergic neuron	3 studies	33% ± 6%	Explore
glutamatergic neuron	3 studies	46% ± 5%	Explore
ependymal cell	3 studies	69% ± 13%	Explore

II. Expression across tissues

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
prostate	87%	82.88	214 / 245	36%	1.35	181 / 502
brain	86%	35.63	2268 / 2642	7%	0.20	49 / 705
kidney	36%	3.45	32 / 89	5%	0.17	44 / 901
thymus	35%	3.82	228 / 653	3%	0.08	20 / 605
pancreas	30%	2.54	99 / 328	5%	0.17	9 / 178
breast	34%	4.56	157 / 459	1%	0.02	10 / 1118
bladder	33%	8.48	7 / 21	1%	0.03	7 / 504
adipose	34%	4.39	411 / 1204	0%	0	0 / 0
lung	30%	4.68	171 / 578	3%	0.07	40 / 1155
adrenal gland	20%	2.20	51 / 258	11%	0.29	25 / 230
liver	27%	2.21	60 / 226	0%	0	0 / 406
heart	21%	1.77	178 / 861	0%	0	0 / 0
intestine	16%	2.01	151 / 966	1%	0.01	5 / 527
ovary	12%	0.84	21 / 180	4%	0.09	18 / 430
esophagus	12%	1.07	175 / 1445	3%	0.06	6 / 183
uterus	13%	3.94	22 / 170	2%	0.05	8 / 459
muscle	9%	0.79	74 / 803	0%	0	0 / 0
stomach	8%	0.69	27 / 359	1%	0.02	4 / 286
skin	8%	0.76	147 / 1809	0%	0.00	1 / 472
peripheral blood	7%	0.74	65 / 929	0%	0	0 / 0
blood vessel	4%	0.29	54 / 1335	0%	0	0 / 0
spleen	2%	0.15	6 / 241	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
eye	0%	0	0 / 0	0%	0	0 / 80
gingiva	0%	0	0 / 0	0%	0	0 / 0
lymph node	0%	0	0 / 0	0%	0	0 / 29
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0
tonsil	0%	0	0 / 0	0%	0	0 / 45
ureter	0%	0	0 / 0	0%	0	0 / 1