LNP1 report

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I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
retina horizontal cell	5 studies	61% ± 17%	Explore
retinal cone cell	5 studies	35% ± 15%	Explore
amacrine cell	4 studies	45% ± 11%	Explore
GABAergic neuron	3 studies	21% ± 2%	Explore
glutamatergic neuron	3 studies	21% ± 2%	Explore

II. Expression across tissues

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
brain	100%	664.31	2640 / 2642	100%	16.84	703 / 705
thymus	99%	300.15	649 / 653	98%	11.45	593 / 605
ovary	100%	297.16	180 / 180	96%	8.50	414 / 430
prostate	96%	183.71	236 / 245	99%	6.44	495 / 502
lung	99%	276.52	570 / 578	92%	5.93	1059 / 1155
breast	96%	175.50	441 / 459	91%	5.27	1020 / 1118
uterus	99%	332.75	169 / 170	87%	6.66	400 / 459
kidney	88%	162.71	78 / 89	94%	20.29	843 / 901
pancreas	88%	140.41	288 / 328	93%	5.22	165 / 178
bladder	100%	330.62	21 / 21	78%	4.11	391 / 504
adrenal gland	88%	136.21	227 / 258	84%	6.19	194 / 230
liver	81%	130.09	183 / 226	76%	4.13	308 / 406
intestine	87%	197.41	841 / 966	63%	2.60	333 / 527
skin	50%	76.24	905 / 1809	93%	11.82	438 / 472
esophagus	70%	148.25	1009 / 1445	72%	3.74	132 / 183
stomach	67%	126.03	242 / 359	69%	2.72	198 / 286
eye	0%	0	0 / 0	100%	80.50	80 / 80
ureter	0%	0	0 / 0	100%	2.71	1 / 1
blood vessel	100%	589.23	1334 / 1335	0%	0	0 / 0
tonsil	0%	0	0 / 0	96%	5.99	43 / 45
adipose	93%	176.95	1117 / 1204	0%	0	0 / 0
muscle	92%	163.73	742 / 803	0%	0	0 / 0
heart	90%	278.62	777 / 861	0%	0	0 / 0
spleen	81%	98.77	195 / 241	0%	0	0 / 0
lymph node	0%	0	0 / 0	59%	2.16	17 / 29
peripheral blood	18%	36.45	170 / 929	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0