LINS1 report

Query

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I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
naive thymus-derived CD4-positive, alpha-beta T cell	5 studies	19% ± 3%	Explore
GABAergic neuron	3 studies	27% ± 6%	Explore
glutamatergic neuron	3 studies	38% ± 5%	Explore
CD4-positive, alpha-beta T cell	3 studies	22% ± 5%	Explore
astrocyte	3 studies	24% ± 6%	Explore

II. Expression across tissues

sc-RNAseq dataData table

Name	Number of supported studies	Average coverage
brain	4 studies	26% ± 6%	Explore

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
breast	100%	899.67	459 / 459	100%	7.31	1118 / 1118
esophagus	100%	868.19	1445 / 1445	100%	8.74	183 / 183
ovary	100%	866.85	180 / 180	100%	4.24	430 / 430
prostate	100%	1010.24	245 / 245	100%	5.49	502 / 502
thymus	100%	1236.58	653 / 653	100%	7.33	605 / 605
uterus	100%	1045.18	170 / 170	100%	7.25	459 / 459
lung	100%	805.62	577 / 578	100%	6.37	1155 / 1155
intestine	100%	976.79	966 / 966	100%	4.73	525 / 527
bladder	100%	801.00	21 / 21	100%	5.02	502 / 504
skin	100%	1121.48	1809 / 1809	100%	7.41	470 / 472
kidney	100%	664.87	89 / 89	99%	4.98	895 / 901
brain	99%	532.50	2622 / 2642	100%	4.89	705 / 705
stomach	100%	642.12	358 / 359	99%	5.08	284 / 286
adrenal gland	100%	717.30	258 / 258	98%	4.47	226 / 230
pancreas	98%	407.84	323 / 328	99%	5.34	177 / 178
liver	100%	407.38	226 / 226	94%	2.43	383 / 406
adipose	100%	764.72	1204 / 1204	0%	0	0 / 0
lymph node	0%	0	0 / 0	100%	7.65	29 / 29
spleen	100%	1374.05	241 / 241	0%	0	0 / 0
tonsil	0%	0	0 / 0	100%	6.77	45 / 45
ureter	0%	0	0 / 0	100%	2.91	1 / 1
blood vessel	100%	529.94	1332 / 1335	0%	0	0 / 0
muscle	99%	403.68	793 / 803	0%	0	0 / 0
peripheral blood	98%	817.55	906 / 929	0%	0	0 / 0
heart	97%	396.84	839 / 861	0%	0	0 / 0
eye	0%	0	0 / 0	95%	4.03	76 / 80
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0