LGI3 report

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I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
oligodendrocyte	10 studies	27% ± 5%	Explore
retinal ganglion cell	4 studies	38% ± 20%	Explore
GABAergic neuron	3 studies	29% ± 5%	Explore

II. Expression across tissues

sc-RNAseq dataData table

Name	Number of supported studies	Average coverage
brain	4 studies	28% ± 5%	Explore

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
brain	100%	7715.86	2639 / 2642	92%	42.29	649 / 705
thymus	92%	1889.15	602 / 653	71%	14.10	430 / 605
skin	52%	575.93	945 / 1809	69%	28.51	327 / 472
eye	0%	0	0 / 0	100%	174.40	80 / 80
lung	45%	1557.64	262 / 578	29%	4.04	333 / 1155
adrenal gland	7%	63.19	18 / 258	54%	6.45	125 / 230
esophagus	30%	336.16	439 / 1445	27%	4.85	50 / 183
tonsil	0%	0	0 / 0	24%	7.42	11 / 45
uterus	9%	67.05	15 / 170	14%	2.06	63 / 459
prostate	9%	65.40	23 / 245	5%	0.22	23 / 502
pancreas	1%	3.24	2 / 328	11%	1.52	19 / 178
blood vessel	10%	97.03	140 / 1335	0%	0	0 / 0
heart	8%	58.92	66 / 861	0%	0	0 / 0
liver	0%	0	0 / 226	5%	0.28	20 / 406
kidney	1%	6.67	1 / 89	3%	0.55	31 / 901
bladder	0%	0	0 / 21	3%	0.37	16 / 504
intestine	1%	6.09	10 / 966	2%	0.09	9 / 527
stomach	1%	6.35	4 / 359	0%	0	0 / 286
breast	0%	1.78	1 / 459	1%	0.07	8 / 1118
adipose	1%	6.39	10 / 1204	0%	0	0 / 0
ovary	1%	3.26	1 / 180	0%	0.01	1 / 430
muscle	0%	4.02	4 / 803	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
lymph node	0%	0	0 / 0	0%	0	0 / 29
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
peripheral blood	0%	0	0 / 929	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0
spleen	0%	0	0 / 241	0%	0	0 / 0
ureter	0%	0	0 / 0	0%	0	0 / 1