LGI2 report

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I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
GABAergic neuron	3 studies	33% ± 1%	Explore

II. Expression across tissues

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
brain	86%	741.01	2285 / 2642	80%	5.35	564 / 705
lung	67%	279.41	388 / 578	85%	6.25	977 / 1155
thymus	83%	380.19	543 / 653	61%	2.51	369 / 605
breast	61%	220.97	281 / 459	83%	2.92	925 / 1118
intestine	73%	702.75	704 / 966	70%	2.63	368 / 527
pancreas	55%	265.68	182 / 328	85%	3.97	152 / 178
uterus	96%	1693.09	163 / 170	40%	10.17	183 / 459
esophagus	66%	1529.81	953 / 1445	63%	4.45	115 / 183
ovary	66%	614.53	118 / 180	55%	2.24	235 / 430
stomach	48%	349.44	171 / 359	72%	5.37	205 / 286
kidney	66%	494.25	59 / 89	49%	1.68	438 / 901
blood vessel	98%	1271.84	1307 / 1335	0%	0	0 / 0
bladder	43%	207.95	9 / 21	55%	2.43	275 / 504
lymph node	0%	0	0 / 0	93%	6.12	27 / 29
adipose	89%	513.73	1066 / 1204	0%	0	0 / 0
heart	84%	431.56	722 / 861	0%	0	0 / 0
prostate	40%	130.47	99 / 245	41%	0.74	208 / 502
tonsil	0%	0	0 / 0	62%	10.90	28 / 45
skin	6%	16.76	111 / 1809	56%	2.52	264 / 472
adrenal gland	27%	76.12	70 / 258	26%	0.69	60 / 230
liver	2%	5.25	4 / 226	26%	0.75	106 / 406
spleen	15%	38.49	37 / 241	0%	0	0 / 0
eye	0%	0	0 / 0	13%	0.30	10 / 80
muscle	3%	8.35	21 / 803	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
peripheral blood	0%	0	0 / 929	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0
ureter	0%	0	0 / 0	0%	0	0 / 1