LCNL1 report

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I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
astrocyte	9 studies	28% ± 11%	Explore

II. Expression across tissues

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
brain	99%	1064.57	2608 / 2642	83%	9.32	582 / 705
prostate	85%	588.65	209 / 245	10%	0.19	48 / 502
spleen	90%	277.17	218 / 241	0%	0	0 / 0
lung	79%	255.72	455 / 578	6%	0.12	65 / 1155
heart	76%	340.15	654 / 861	0%	0	0 / 0
uterus	66%	321.74	112 / 170	10%	0.40	44 / 459
kidney	63%	170.33	56 / 89	1%	0.07	13 / 901
adrenal gland	48%	132.93	123 / 258	1%	0.10	3 / 230
lymph node	0%	0	0 / 0	41%	0.88	12 / 29
ovary	8%	19.22	14 / 180	26%	1.29	112 / 430
skin	15%	31.19	263 / 1809	8%	0.21	39 / 472
adipose	20%	40.22	237 / 1204	0%	0	0 / 0
breast	12%	31.00	57 / 459	1%	0.02	15 / 1118
esophagus	13%	30.81	185 / 1445	1%	0.01	1 / 183
intestine	12%	28.15	114 / 966	1%	0.02	5 / 527
pancreas	1%	0.83	2 / 328	11%	0.18	19 / 178
thymus	6%	10.94	36 / 653	5%	0.15	31 / 605
blood vessel	8%	21.68	107 / 1335	0%	0	0 / 0
liver	1%	2.27	2 / 226	5%	0.34	22 / 406
muscle	5%	9.48	42 / 803	0%	0	0 / 0
tonsil	0%	0	0 / 0	4%	0.07	2 / 45
stomach	3%	5.13	12 / 359	0%	0	0 / 286
bladder	0%	0	0 / 21	3%	0.08	15 / 504
peripheral blood	1%	4.31	12 / 929	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
eye	0%	0	0 / 0	0%	0	0 / 80
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0
ureter	0%	0	0 / 0	0%	0	0 / 1