JAKMIP3 report

Query

Invalid input gene. Please select from the suggestions.

I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
oligodendrocyte	10 studies	32% ± 9%	Explore
glutamatergic neuron	4 studies	50% ± 21%	Explore
oligodendrocyte precursor cell	4 studies	28% ± 10%	Explore
GABAergic neuron	3 studies	53% ± 6%	Explore
astrocyte	3 studies	30% ± 7%	Explore
interneuron	3 studies	46% ± 21%	Explore

II. Expression across tissues

sc-RNAseq dataData table

Name	Number of supported studies	Average coverage
brain	5 studies	42% ± 13%	Explore

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
brain	100%	1975.65	2638 / 2642	67%	2.04	475 / 705
adrenal gland	90%	413.76	231 / 258	59%	2.20	135 / 230
prostate	96%	728.79	235 / 245	48%	0.84	240 / 502
ovary	100%	739.97	180 / 180	2%	0.03	9 / 430
uterus	86%	329.42	147 / 170	5%	0.09	25 / 459
breast	56%	218.69	259 / 459	24%	0.46	268 / 1118
esophagus	57%	244.73	828 / 1445	23%	0.83	42 / 183
bladder	71%	336.57	15 / 21	6%	0.17	29 / 504
thymus	73%	253.35	474 / 653	2%	0.04	11 / 605
muscle	64%	175.76	517 / 803	0%	0	0 / 0
intestine	62%	260.21	599 / 966	1%	0.02	4 / 527
heart	57%	165.92	491 / 861	0%	0	0 / 0
stomach	44%	115.55	159 / 359	1%	0.01	3 / 286
lung	14%	29.58	81 / 578	26%	0.80	303 / 1155
adipose	29%	67.16	344 / 1204	0%	0	0 / 0
skin	27%	63.43	492 / 1809	0%	0.01	2 / 472
blood vessel	19%	43.24	251 / 1335	0%	0	0 / 0
pancreas	15%	32.57	50 / 328	3%	0.04	5 / 178
eye	0%	0	0 / 0	8%	0.09	6 / 80
spleen	5%	9.51	11 / 241	0%	0	0 / 0
kidney	2%	4.70	2 / 89	1%	0.02	12 / 901
lymph node	0%	0	0 / 0	3%	0.04	1 / 29
liver	0%	0.76	1 / 226	1%	0.01	4 / 406
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
peripheral blood	0%	0	0 / 929	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0
tonsil	0%	0	0 / 0	0%	0	0 / 45
ureter	0%	0	0 / 0	0%	0	0 / 1