ISLR report

Query

Invalid input gene. Please select from the suggestions.

I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
fibroblast	29 studies	37% ± 19%	Explore
connective tissue cell	10 studies	41% ± 19%	Explore
smooth muscle cell	6 studies	17% ± 1%	Explore
myofibroblast cell	4 studies	21% ± 4%	Explore
adventitial cell	4 studies	28% ± 10%	Explore

II. Expression across tissues

sc-RNAseq dataData table

Name	Number of supported studies	Average coverage
uterus	3 studies	25% ± 8%	Explore

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
thymus	100%	7242.51	651 / 653	95%	244.62	574 / 605
breast	98%	7619.82	450 / 459	95%	214.25	1061 / 1118
ovary	100%	17206.17	180 / 180	84%	147.72	360 / 430
prostate	98%	5659.19	240 / 245	86%	66.83	430 / 502
lung	93%	3943.76	536 / 578	82%	94.56	944 / 1155
uterus	100%	20415.15	170 / 170	71%	156.01	326 / 459
bladder	100%	6862.67	21 / 21	61%	83.67	307 / 504
intestine	86%	5391.09	833 / 966	69%	87.84	363 / 527
skin	92%	5584.95	1662 / 1809	58%	81.16	273 / 472
esophagus	77%	4923.78	1116 / 1445	58%	68.81	107 / 183
stomach	46%	2814.74	164 / 359	75%	97.47	214 / 286
blood vessel	100%	10992.63	1334 / 1335	0%	0	0 / 0
pancreas	8%	174.91	26 / 328	91%	319.10	162 / 178
adipose	99%	8418.60	1190 / 1204	0%	0	0 / 0
spleen	90%	3410.31	217 / 241	0%	0	0 / 0
kidney	52%	1797.73	46 / 89	24%	23.77	216 / 901
adrenal gland	57%	1503.51	148 / 258	16%	24.55	37 / 230
heart	72%	3072.52	624 / 861	0%	0	0 / 0
lymph node	0%	0	0 / 0	69%	47.29	20 / 29
tonsil	0%	0	0 / 0	64%	86.49	29 / 45
muscle	30%	703.82	243 / 803	0%	0	0 / 0
brain	7%	154.69	186 / 2642	21%	20.19	146 / 705
liver	4%	61.84	8 / 226	19%	16.60	78 / 406
eye	0%	0	0 / 0	9%	4.03	7 / 80
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
peripheral blood	0%	0	0 / 929	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0
ureter	0%	0	0 / 0	0%	0	0 / 1