Insufficient scRNA-seq data for expression of IGSF5 at single-cell level.
Insufficient scRNA-seq data for expression of IGSF5 at tissue level.
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
prostate | 95% | 80.00 | 233 / 245 | 95% | 4.56 | 476 / 502 |
brain | 87% | 68.11 | 2293 / 2642 | 92% | 3.68 | 651 / 705 |
pancreas | 99% | 79.02 | 325 / 328 | 51% | 1.06 | 90 / 178 |
adrenal gland | 99% | 101.63 | 256 / 258 | 37% | 1.29 | 84 / 230 |
ureter | 0% | 0 | 0 / 0 | 100% | 1.36 | 1 / 1 |
heart | 95% | 224.10 | 820 / 861 | 0% | 0 | 0 / 0 |
thymus | 77% | 31.44 | 505 / 653 | 12% | 0.25 | 73 / 605 |
ovary | 77% | 42.76 | 138 / 180 | 6% | 0.11 | 24 / 430 |
kidney | 63% | 19.73 | 56 / 89 | 8% | 0.15 | 75 / 901 |
breast | 23% | 10.10 | 106 / 459 | 43% | 1.27 | 476 / 1118 |
uterus | 48% | 17.75 | 81 / 170 | 14% | 0.36 | 63 / 459 |
bladder | 43% | 11.00 | 9 / 21 | 15% | 0.32 | 74 / 504 |
skin | 45% | 17.54 | 823 / 1809 | 8% | 0.14 | 38 / 472 |
intestine | 46% | 11.01 | 445 / 966 | 4% | 0.08 | 22 / 527 |
esophagus | 26% | 6.39 | 375 / 1445 | 5% | 0.09 | 10 / 183 |
blood vessel | 28% | 6.61 | 369 / 1335 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 25% | 0.38 | 20 / 80 |
spleen | 20% | 4.44 | 49 / 241 | 0% | 0 | 0 / 0 |
stomach | 15% | 3.66 | 55 / 359 | 2% | 0.06 | 6 / 286 |
liver | 5% | 0.73 | 11 / 226 | 5% | 0.16 | 21 / 406 |
lung | 4% | 1.00 | 23 / 578 | 6% | 0.12 | 65 / 1155 |
tonsil | 0% | 0 | 0 / 0 | 4% | 0.09 | 2 / 45 |
adipose | 3% | 0.67 | 31 / 1204 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 29 |
muscle | 0% | 0 | 0 / 803 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
peripheral blood | 0% | 0 | 0 / 929 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0098609 | Biological process | cell-cell adhesion |
GO_0016324 | Cellular component | apical plasma membrane |
GO_0009986 | Cellular component | cell surface |
GO_0005923 | Cellular component | bicellular tight junction |
Gene name | IGSF5 |
Protein name | Alternative protein IGSF5 Immunoglobulin superfamily member 5 (IgSF5) (Junctional adhesion molecule 4) (JAM-4) |
Synonyms | JAM4 |
Description | FUNCTION: Provides, together with MAGI1, an adhesion machinery at tight junctions, which may regulate the permeability of kidney glomerulus and small intestinal epithelial cells. Mediates calcium-independent homophilic cell adhesion. In testis, it may function as a cell adhesion molecule rather than a tight-junction protein. It may participate in the adhesion between spermatogonia-spermatogonia, spermatogonia-Sertoli cells, and Sertoli cells-Sertoli cells (By similarity). . |
Accessions | Q9NSI5 L8E8K9 ENST00000380588.5 |