IGDCC4 report

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I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
astrocyte	3 studies	20% ± 5%	Explore

II. Expression across tissues

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
brain	98%	720.96	2578 / 2642	98%	20.99	692 / 705
thymus	100%	1714.49	652 / 653	91%	10.89	552 / 605
ovary	100%	3128.72	180 / 180	38%	1.80	165 / 430
adrenal gland	100%	2333.45	258 / 258	34%	4.55	79 / 230
skin	68%	300.88	1229 / 1809	58%	6.09	276 / 472
bladder	95%	1300.19	20 / 21	30%	1.20	150 / 504
esophagus	80%	550.14	1161 / 1445	44%	2.01	81 / 183
stomach	74%	364.80	266 / 359	50%	2.22	143 / 286
uterus	94%	813.59	160 / 170	24%	2.99	110 / 459
intestine	70%	379.25	680 / 966	43%	1.85	229 / 527
breast	70%	377.42	322 / 459	39%	1.68	441 / 1118
muscle	99%	1368.87	795 / 803	0%	0	0 / 0
lung	42%	166.56	240 / 578	33%	1.34	379 / 1155
kidney	34%	93.73	30 / 89	41%	3.01	366 / 901
pancreas	22%	54.54	71 / 328	52%	2.16	93 / 178
adipose	72%	459.68	864 / 1204	0%	0	0 / 0
heart	68%	276.80	589 / 861	0%	0	0 / 0
prostate	47%	241.74	115 / 245	2%	0.10	11 / 502
blood vessel	35%	144.56	465 / 1335	0%	0	0 / 0
lymph node	0%	0	0 / 0	28%	0.92	8 / 29
peripheral blood	11%	50.88	103 / 929	0%	0	0 / 0
liver	0%	0	0 / 226	10%	0.55	41 / 406
eye	0%	0	0 / 0	10%	0.31	8 / 80
spleen	7%	11.41	16 / 241	0%	0	0 / 0
tonsil	0%	0	0 / 0	4%	0.10	2 / 45
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0
ureter	0%	0	0 / 0	0%	0	0 / 1