IGDCC3 report

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I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
astrocyte	7 studies	19% ± 4%	Explore
glutamatergic neuron	3 studies	20% ± 4%	Explore
neuron	3 studies	18% ± 4%	Explore

II. Expression across tissues

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
brain	100%	445.81	2635 / 2642	98%	8.52	690 / 705
thymus	89%	140.02	580 / 653	56%	3.59	338 / 605
ovary	83%	123.08	150 / 180	18%	2.48	78 / 430
ureter	0%	0	0 / 0	100%	14.80	1 / 1
breast	43%	90.63	196 / 459	37%	2.32	417 / 1118
uterus	55%	108.74	93 / 170	17%	2.55	78 / 459
intestine	53%	61.54	509 / 966	5%	0.31	27 / 527
bladder	33%	21.52	7 / 21	18%	1.21	92 / 504
kidney	44%	33.55	39 / 89	1%	0.05	10 / 901
stomach	33%	21.36	118 / 359	4%	0.45	12 / 286
adrenal gland	10%	7.48	26 / 258	13%	0.72	31 / 230
prostate	17%	14.56	41 / 245	0%	0.00	1 / 502
liver	0%	0	0 / 226	10%	0.71	42 / 406
skin	0%	0.20	6 / 1809	9%	1.55	44 / 472
lung	1%	0.36	3 / 578	3%	0.41	40 / 1155
pancreas	0%	0	0 / 328	4%	0.22	7 / 178
esophagus	1%	0.32	8 / 1445	2%	0.12	4 / 183
tonsil	0%	0	0 / 0	2%	0.02	1 / 45
eye	0%	0	0 / 0	1%	0.02	1 / 80
adipose	1%	0.42	7 / 1204	0%	0	0 / 0
spleen	0%	0.18	1 / 241	0%	0	0 / 0
muscle	0%	0.27	3 / 803	0%	0	0 / 0
heart	0%	0.16	3 / 861	0%	0	0 / 0
blood vessel	0%	0.07	1 / 1335	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
lymph node	0%	0	0 / 0	0%	0	0 / 29
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
peripheral blood	0%	0	0 / 929	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0