IDNK report

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I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
epithelial cell	3 studies	19% ± 3%	Explore
astrocyte	3 studies	20% ± 5%	Explore

II. Expression across tissues

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
liver	100%	915.46	226 / 226	100%	20.73	406 / 406
brain	100%	1056.19	2641 / 2642	100%	22.40	703 / 705
prostate	100%	427.33	244 / 245	100%	12.57	501 / 502
thymus	100%	448.41	651 / 653	99%	18.26	600 / 605
pancreas	99%	239.98	325 / 328	99%	9.77	176 / 178
intestine	100%	377.36	965 / 966	96%	8.16	506 / 527
kidney	100%	933.98	89 / 89	96%	12.12	863 / 901
stomach	99%	279.35	357 / 359	96%	7.58	275 / 286
breast	99%	372.30	456 / 459	96%	10.47	1074 / 1118
adrenal gland	100%	514.03	257 / 258	93%	18.56	215 / 230
uterus	98%	208.97	167 / 170	91%	7.44	419 / 459
lung	98%	293.57	564 / 578	92%	7.50	1058 / 1155
ovary	96%	278.29	172 / 180	91%	7.11	392 / 430
bladder	100%	283.33	21 / 21	87%	7.11	437 / 504
esophagus	99%	290.75	1433 / 1445	84%	5.37	153 / 183
skin	96%	215.39	1745 / 1809	84%	5.68	395 / 472
lymph node	0%	0	0 / 0	100%	14.75	29 / 29
spleen	100%	427.38	241 / 241	0%	0	0 / 0
ureter	0%	0	0 / 0	100%	11.95	1 / 1
adipose	99%	374.95	1197 / 1204	0%	0	0 / 0
blood vessel	99%	285.06	1318 / 1335	0%	0	0 / 0
eye	0%	0	0 / 0	98%	17.68	78 / 80
tonsil	0%	0	0 / 0	87%	5.25	39 / 45
peripheral blood	85%	417.20	794 / 929	0%	0	0 / 0
heart	81%	138.64	695 / 861	0%	0	0 / 0
muscle	26%	37.84	211 / 803	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0