HAL report

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I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
hepatocyte	6 studies	43% ± 29%	Explore

II. Expression across tissues

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
liver	100%	16279.22	226 / 226	82%	62.32	332 / 406
lung	76%	402.59	439 / 578	41%	3.59	476 / 1155
spleen	95%	1324.07	230 / 241	0%	0	0 / 0
peripheral blood	80%	4126.56	745 / 929	0%	0	0 / 0
skin	71%	3968.25	1282 / 1809	8%	1.53	38 / 472
pancreas	8%	45.22	25 / 328	24%	0.83	42 / 178
ovary	0%	0	0 / 180	30%	1.03	129 / 430
esophagus	7%	33.32	95 / 1445	22%	0.96	40 / 183
uterus	3%	10.78	5 / 170	17%	0.57	78 / 459
bladder	5%	14.48	1 / 21	15%	0.80	76 / 504
stomach	3%	9.95	10 / 359	13%	0.68	38 / 286
intestine	3%	8.88	26 / 966	10%	0.27	55 / 527
adipose	12%	60.30	143 / 1204	0%	0	0 / 0
breast	2%	6.90	8 / 459	10%	0.38	113 / 1118
lymph node	0%	0	0 / 0	7%	0.28	2 / 29
kidney	0%	0	0 / 89	4%	0.18	33 / 901
tonsil	0%	0	0 / 0	2%	0.03	1 / 45
adrenal gland	0%	1.48	1 / 258	1%	0.04	3 / 230
blood vessel	1%	6.28	17 / 1335	0%	0	0 / 0
heart	1%	5.08	10 / 861	0%	0	0 / 0
brain	0%	0	0 / 2642	1%	0.02	8 / 705
prostate	1%	2.37	2 / 245	0%	0	0 / 502
muscle	0%	0.86	2 / 803	0%	0	0 / 0
thymus	0%	0	0 / 653	0%	0.00	1 / 605
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
eye	0%	0	0 / 0	0%	0	0 / 80
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0
ureter	0%	0	0 / 0	0%	0	0 / 1