GYPE report

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I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
erythrocyte	4 studies	36% ± 17%	Explore

II. Expression across tissues

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
thymus	98%	71.58	642 / 653	27%	0.73	165 / 605
skin	88%	91.88	1594 / 1809	28%	1.18	132 / 472
lung	97%	83.90	561 / 578	12%	0.27	137 / 1155
breast	97%	65.63	445 / 459	8%	0.14	95 / 1118
kidney	84%	36.42	75 / 89	20%	0.35	176 / 901
bladder	95%	55.43	20 / 21	5%	0.10	27 / 504
spleen	100%	239.63	241 / 241	0%	0	0 / 0
blood vessel	100%	104.51	1329 / 1335	0%	0	0 / 0
adipose	99%	95.84	1195 / 1204	0%	0	0 / 0
peripheral blood	94%	128.59	875 / 929	0%	0	0 / 0
heart	82%	51.69	708 / 861	0%	0	0 / 0
intestine	79%	36.34	759 / 966	3%	0.06	17 / 527
prostate	79%	31.62	194 / 245	1%	0.02	3 / 502
stomach	73%	22.65	263 / 359	5%	0.09	15 / 286
esophagus	64%	20.66	928 / 1445	4%	0.08	8 / 183
uterus	58%	18.18	98 / 170	5%	0.13	22 / 459
lymph node	0%	0	0 / 0	62%	1.94	18 / 29
brain	49%	15.14	1283 / 2642	4%	0.08	29 / 705
pancreas	30%	7.08	99 / 328	20%	0.36	35 / 178
adrenal gland	45%	9.53	115 / 258	3%	0.05	7 / 230
muscle	38%	8.85	304 / 803	0%	0	0 / 0
eye	0%	0	0 / 0	30%	0.87	24 / 80
liver	19%	4.81	44 / 226	1%	0.03	5 / 406
ovary	16%	5.28	28 / 180	2%	0.03	7 / 430
tonsil	0%	0	0 / 0	2%	0.03	1 / 45
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0
ureter	0%	0	0 / 0	0%	0	0 / 1