Insufficient scRNA-seq data for expression of GARIN1B at single-cell level.
Insufficient scRNA-seq data for expression of GARIN1B at tissue level.
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
brain | 95% | 34.09 | 2520 / 2642 | 11% | 0.21 | 77 / 705 |
prostate | 90% | 20.61 | 221 / 245 | 4% | 0.09 | 18 / 502 |
spleen | 92% | 12.71 | 222 / 241 | 0% | 0 | 0 / 0 |
kidney | 88% | 14.75 | 78 / 89 | 1% | 0.01 | 5 / 901 |
thymus | 78% | 10.38 | 512 / 653 | 0% | 0.01 | 3 / 605 |
pancreas | 71% | 6.37 | 232 / 328 | 2% | 0.03 | 4 / 178 |
breast | 64% | 12.63 | 296 / 459 | 6% | 0.11 | 65 / 1118 |
blood vessel | 69% | 6.49 | 920 / 1335 | 0% | 0 | 0 / 0 |
adrenal gland | 64% | 6.60 | 166 / 258 | 4% | 0.07 | 10 / 230 |
muscle | 62% | 8.48 | 500 / 803 | 0% | 0 | 0 / 0 |
ovary | 59% | 4.59 | 107 / 180 | 2% | 0.05 | 10 / 430 |
bladder | 57% | 4.19 | 12 / 21 | 3% | 0.08 | 14 / 504 |
uterus | 51% | 3.95 | 87 / 170 | 3% | 0.05 | 14 / 459 |
lung | 40% | 3.15 | 232 / 578 | 9% | 0.39 | 107 / 1155 |
intestine | 49% | 4.13 | 469 / 966 | 0% | 0.00 | 1 / 527 |
adipose | 47% | 3.93 | 564 / 1204 | 0% | 0 | 0 / 0 |
stomach | 45% | 3.22 | 160 / 359 | 2% | 0.03 | 5 / 286 |
esophagus | 38% | 3.46 | 550 / 1445 | 6% | 0.23 | 11 / 183 |
heart | 44% | 3.14 | 377 / 861 | 0% | 0 | 0 / 0 |
skin | 38% | 3.45 | 695 / 1809 | 1% | 0.01 | 4 / 472 |
liver | 37% | 2.95 | 84 / 226 | 0% | 0.00 | 1 / 406 |
peripheral blood | 28% | 2.32 | 263 / 929 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 7% | 0.12 | 3 / 45 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 80 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 29 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0001675 | Biological process | acrosome assembly |
GO_0007340 | Biological process | acrosome reaction |
GO_0005794 | Cellular component | Golgi apparatus |
Gene name | GARIN1B |
Protein name | Golgi associated RAB2 interactor 1B Golgi-associated RAB2 interactor protein 1B (Testis development protein NYD-SP18) |
Synonyms | FAM71F1 FAM137A |
Description | FUNCTION: RAB2B effector protein required for accurate acrosome formation and normal male fertility. In complex with RAB2A/RAB2B, seems to suppress excessive vesicle trafficking during acrosome formation. . |
Accessions | ENST00000471558.5 Q96KD3 F8WC78 ENST00000315184.9 [Q96KD3-1] F8WC62 ENST00000466842.1 ENST00000485070.5 [Q96KD3-3] ENST00000621392.5 [Q96KD3-2] ENST00000484425.6 H7C4R1 |