FAXC report

Query

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I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
glutamatergic neuron	9 studies	38% ± 25%	Explore
interneuron	6 studies	36% ± 21%	Explore
GABAergic neuron	6 studies	42% ± 19%	Explore
neuron	5 studies	25% ± 5%	Explore
oligodendrocyte precursor cell	4 studies	26% ± 7%	Explore
GABAergic interneuron	3 studies	23% ± 4%	Explore

II. Expression across tissues

sc-RNAseq dataData table

Name	Number of supported studies	Average coverage
brain	8 studies	30% ± 19%	Explore

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
brain	97%	1917.93	2557 / 2642	98%	7.58	694 / 705
prostate	96%	760.05	235 / 245	99%	3.24	495 / 502
uterus	85%	390.65	145 / 170	61%	1.77	282 / 459
breast	44%	182.50	204 / 459	90%	3.38	1003 / 1118
esophagus	79%	1207.89	1139 / 1445	52%	1.91	95 / 183
bladder	81%	1405.95	17 / 21	37%	1.14	188 / 504
lung	31%	95.42	177 / 578	78%	3.90	896 / 1155
thymus	22%	67.44	143 / 653	86%	4.36	520 / 605
intestine	72%	1354.04	700 / 966	16%	0.32	85 / 527
skin	5%	16.09	98 / 1809	81%	3.83	381 / 472
blood vessel	79%	418.52	1049 / 1335	0%	0	0 / 0
stomach	51%	608.26	183 / 359	22%	0.60	63 / 286
adrenal gland	6%	23.07	16 / 258	65%	3.94	150 / 230
tonsil	0%	0	0 / 0	58%	1.89	26 / 45
kidney	15%	44.40	13 / 89	34%	1.04	302 / 901
ovary	18%	55.29	33 / 180	27%	0.61	118 / 430
pancreas	13%	34.88	41 / 328	31%	0.78	55 / 178
eye	0%	0	0 / 0	43%	1.04	34 / 80
liver	0%	0	0 / 226	7%	0.15	28 / 406
adipose	4%	11.48	46 / 1204	0%	0	0 / 0
spleen	0%	0.97	1 / 241	0%	0	0 / 0
muscle	0%	0.92	3 / 803	0%	0	0 / 0
heart	0%	1.43	2 / 861	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
lymph node	0%	0	0 / 0	0%	0	0 / 29
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
peripheral blood	0%	0	0 / 929	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0
ureter	0%	0	0 / 0	0%	0	0 / 1