II. Expression across tissues
sc-RNAseq data
Insufficient scRNA-seq data for expression of ERVV-1 at tissue level.
Tissue | GTEx Coverage  | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
|---|---|---|---|---|---|---|
| bladder | 71% | 14.43 | 15 / 21 | 24% | 1.13 | 123 / 504 |
| prostate | 82% | 19.96 | 201 / 245 | 1% | 0.02 | 7 / 502 |
| muscle | 44% | 4.36 | 353 / 803 | 0% | 0 | 0 / 0 |
| kidney | 29% | 9.22 | 26 / 89 | 14% | 1.67 | 130 / 901 |
| thymus | 38% | 4.86 | 250 / 653 | 4% | 0.20 | 24 / 605 |
| heart | 37% | 3.84 | 318 / 861 | 0% | 0 | 0 / 0 |
| uterus | 26% | 1.88 | 44 / 170 | 10% | 0.47 | 46 / 459 |
| brain | 33% | 14.35 | 861 / 2642 | 0% | 0.02 | 3 / 705 |
| intestine | 28% | 1.72 | 270 / 966 | 3% | 0.16 | 17 / 527 |
| lymph node | 0% | 0 | 0 / 0 | 31% | 1.83 | 9 / 29 |
| ovary | 19% | 1.01 | 34 / 180 | 2% | 0.04 | 7 / 430 |
| esophagus | 11% | 0.78 | 166 / 1445 | 8% | 1.52 | 15 / 183 |
| breast | 12% | 0.90 | 56 / 459 | 7% | 0.28 | 80 / 1118 |
| lung | 11% | 0.50 | 62 / 578 | 7% | 0.33 | 86 / 1155 |
| adipose | 16% | 0.96 | 196 / 1204 | 0% | 0 | 0 / 0 |
| spleen | 15% | 0.90 | 37 / 241 | 0% | 0 | 0 / 0 |
| stomach | 7% | 0.38 | 25 / 359 | 3% | 0.07 | 10 / 286 |
| adrenal gland | 8% | 0.49 | 21 / 258 | 0% | 0 | 0 / 230 |
| skin | 5% | 0.24 | 89 / 1809 | 1% | 0.04 | 5 / 472 |
| liver | 4% | 0.21 | 10 / 226 | 1% | 0.03 | 6 / 406 |
| pancreas | 3% | 0.15 | 11 / 328 | 2% | 0.06 | 4 / 178 |
| peripheral blood | 4% | 0.97 | 36 / 929 | 0% | 0 | 0 / 0 |
| blood vessel | 4% | 0.16 | 47 / 1335 | 0% | 0 | 0 / 0 |
| eye | 0% | 0 | 0 / 0 | 1% | 0.04 | 1 / 80 |
| abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| tonsil | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 45 |
| ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |