Name | Number of supported studies | Average coverage | |
---|---|---|---|
epithelial cell | 4 studies | 20% ± 4% | |
macrophage | 4 studies | 18% ± 2% | |
GABAergic neuron | 3 studies | 37% ± 5% | |
glutamatergic neuron | 3 studies | 44% ± 5% | |
microglial cell | 3 studies | 21% ± 3% | |
astrocyte | 3 studies | 29% ± 9% | |
oligodendrocyte | 3 studies | 23% ± 7% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 4 studies | 32% ± 5% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 1031.49 | 1444 / 1445 | 100% | 18.58 | 183 / 183 |
breast | 100% | 1104.02 | 459 / 459 | 100% | 28.39 | 1116 / 1118 |
prostate | 100% | 937.42 | 245 / 245 | 99% | 23.30 | 499 / 502 |
stomach | 100% | 785.98 | 358 / 359 | 100% | 17.81 | 285 / 286 |
uterus | 100% | 906.85 | 170 / 170 | 99% | 20.18 | 456 / 459 |
intestine | 100% | 1358.32 | 966 / 966 | 99% | 21.11 | 523 / 527 |
thymus | 100% | 841.64 | 653 / 653 | 99% | 19.97 | 599 / 605 |
lung | 100% | 943.32 | 576 / 578 | 99% | 18.79 | 1147 / 1155 |
bladder | 100% | 1065.33 | 21 / 21 | 99% | 17.63 | 497 / 504 |
skin | 100% | 1509.50 | 1808 / 1809 | 99% | 23.48 | 465 / 472 |
brain | 99% | 534.02 | 2604 / 2642 | 100% | 17.26 | 704 / 705 |
ovary | 100% | 678.01 | 180 / 180 | 98% | 12.78 | 422 / 430 |
kidney | 100% | 809.00 | 89 / 89 | 98% | 16.45 | 884 / 901 |
pancreas | 98% | 546.31 | 321 / 328 | 99% | 17.70 | 176 / 178 |
adrenal gland | 100% | 1257.07 | 258 / 258 | 93% | 14.46 | 215 / 230 |
liver | 97% | 481.19 | 220 / 226 | 95% | 10.78 | 385 / 406 |
adipose | 100% | 1015.19 | 1204 / 1204 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 19.51 | 29 / 29 |
muscle | 100% | 1152.31 | 803 / 803 | 0% | 0 | 0 / 0 |
spleen | 100% | 939.71 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 19.90 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 5.18 | 1 / 1 |
blood vessel | 100% | 1132.83 | 1334 / 1335 | 0% | 0 | 0 / 0 |
heart | 95% | 757.25 | 815 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 90% | 790.94 | 840 / 929 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 86% | 8.54 | 69 / 80 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0046039 | Biological process | GTP metabolic process |
GO_0006414 | Biological process | translational elongation |
GO_0042256 | Biological process | cytosolic ribosome assembly |
GO_1990904 | Cellular component | ribonucleoprotein complex |
GO_0005829 | Cellular component | cytosol |
GO_0043022 | Molecular function | ribosome binding |
GO_0005525 | Molecular function | GTP binding |
GO_0003746 | Molecular function | translation elongation factor activity |
GO_0003924 | Molecular function | GTPase activity |
Gene name | EFL1 |
Protein name | Elongation factor-like GTPase 1 (Elongation factor Tu GTP-binding domain-containing protein 1) (Elongation factor-like 1) (Protein FAM42A) Elongation factor like GTPase 1 |
Synonyms | EFTUD1 FAM42A |
Description | FUNCTION: Involved in the biogenesis of the 60S ribosomal subunit and translational activation of ribosomes. Together with SBDS, triggers the GTP-dependent release of EIF6 from 60S pre-ribosomes in the cytoplasm, thereby activating ribosomes for translation competence by allowing 80S ribosome assembly and facilitating EIF6 recycling to the nucleus, where it is required for 60S rRNA processing and nuclear export. Has low intrinsic GTPase activity. GTPase activity is increased by contact with 60S ribosome subunits. . |
Accessions | H0YKI9 H0YKY7 ENST00000561389.2 ENST00000557939.2 ENST00000650113.1 A0A8Q3SIM9 ENST00000696336.1 ENST00000268206.12 [Q7Z2Z2-1] H0YNW8 ENST00000557844.1 ENST00000359445.8 [Q7Z2Z2-2] A0A8Q3SIF5 ENST00000696327.1 ENST00000696330.1 [Q7Z2Z2-1] A0A3B3ITU1 Q7Z2Z2 A0A8Q3WL51 ENST00000561340.2 ENST00000558974.1 H0YK75 |