Name | Number of supported studies | Average coverage | |
---|---|---|---|
epithelial cell | 5 studies | 30% ± 10% | |
endothelial cell | 4 studies | 22% ± 7% | |
basal cell | 4 studies | 30% ± 11% | |
macrophage | 4 studies | 20% ± 3% | |
goblet cell | 4 studies | 30% ± 8% | |
ciliated cell | 3 studies | 22% ± 6% | |
hepatocyte | 3 studies | 27% ± 10% | |
astrocyte | 3 studies | 28% ± 3% | |
microglial cell | 3 studies | 17% ± 1% | |
oligodendrocyte precursor cell | 3 studies | 25% ± 5% | |
fibroblast | 3 studies | 21% ± 4% | |
transit amplifying cell | 3 studies | 29% ± 14% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
prostate | 100% | 6378.69 | 245 / 245 | 99% | 26.56 | 499 / 502 |
thymus | 100% | 6975.92 | 653 / 653 | 99% | 19.24 | 601 / 605 |
liver | 100% | 3197.26 | 226 / 226 | 99% | 15.88 | 403 / 406 |
esophagus | 100% | 2778.62 | 1439 / 1445 | 99% | 13.54 | 182 / 183 |
intestine | 100% | 3560.53 | 966 / 966 | 99% | 18.02 | 520 / 527 |
adrenal gland | 100% | 3420.43 | 258 / 258 | 98% | 11.83 | 225 / 230 |
uterus | 100% | 4764.36 | 170 / 170 | 98% | 16.58 | 449 / 459 |
bladder | 100% | 3695.00 | 21 / 21 | 98% | 17.36 | 493 / 504 |
pancreas | 100% | 2472.16 | 328 / 328 | 98% | 18.16 | 174 / 178 |
kidney | 100% | 4429.21 | 89 / 89 | 97% | 17.64 | 878 / 901 |
stomach | 100% | 2700.91 | 359 / 359 | 97% | 14.67 | 276 / 286 |
ovary | 100% | 4275.17 | 180 / 180 | 94% | 14.16 | 405 / 430 |
breast | 100% | 3408.31 | 459 / 459 | 94% | 13.50 | 1046 / 1118 |
lung | 100% | 2996.25 | 576 / 578 | 93% | 13.90 | 1076 / 1155 |
skin | 100% | 4182.60 | 1809 / 1809 | 93% | 10.81 | 437 / 472 |
brain | 93% | 1251.91 | 2444 / 2642 | 99% | 17.26 | 695 / 705 |
lymph node | 0% | 0 | 0 / 0 | 100% | 18.86 | 29 / 29 |
spleen | 100% | 4214.03 | 241 / 241 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 100% | 32.09 | 1 / 1 |
adipose | 100% | 2725.43 | 1203 / 1204 | 0% | 0 | 0 / 0 |
muscle | 99% | 1955.78 | 794 / 803 | 0% | 0 | 0 / 0 |
blood vessel | 99% | 2103.98 | 1319 / 1335 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 99% | 16.29 | 79 / 80 |
tonsil | 0% | 0 | 0 / 0 | 96% | 13.26 | 43 / 45 |
heart | 94% | 1415.41 | 807 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 82% | 1514.11 | 765 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0019538 | Biological process | protein metabolic process |
GO_0006103 | Biological process | 2-oxoglutarate metabolic process |
GO_0006108 | Biological process | malate metabolic process |
GO_0010043 | Biological process | response to zinc ion |
GO_0010042 | Biological process | response to manganese ion |
GO_0032025 | Biological process | response to cobalt ion |
GO_0032026 | Biological process | response to magnesium ion |
GO_0051592 | Biological process | response to calcium ion |
GO_0005759 | Cellular component | mitochondrial matrix |
GO_0005739 | Cellular component | mitochondrion |
GO_0071949 | Molecular function | FAD binding |
GO_0051990 | Molecular function | (R)-2-hydroxyglutarate dehydrogenase activity |
GO_0008270 | Molecular function | zinc ion binding |
Gene name | D2HGDH |
Protein name | D-2-hydroxyglutarate dehydrogenase, mitochondrial (EC 1.1.99.39) D-2-hydroxyglutarate dehydrogenase |
Synonyms | D2HGD hCG_31745 |
Description | FUNCTION: Catalyzes the oxidation of D-2-hydroxyglutarate (D-2-HG) to alpha-ketoglutarate . Also catalyzes the oxidation of other D-2-hydroxyacids, such as D-malate (D-MAL) and D-lactate (D-LAC) . Exhibits high activities towards D-2-HG and D-MAL but a very weak activity towards D-LAC . . |
Accessions | ENST00000403782.5 ENST00000432449.1 Q8N465 ENST00000437164.1 ENST00000454048.1 ENST00000417686.1 H7C3L2 ENST00000321264.9 [Q8N465-1] H7C021 ENST00000436747.5 ENST00000400769.6 G5E9E8 H7C290 H7C0N1 F8WCF9 B5MCV2 |