Name | Number of supported studies | Average coverage | |
---|---|---|---|
astrocyte | 5 studies | 26% ± 5% | |
oligodendrocyte precursor cell | 5 studies | 29% ± 15% | |
oligodendrocyte | 5 studies | 18% ± 1% | |
epithelial cell | 3 studies | 22% ± 5% | |
retinal ganglion cell | 3 studies | 37% ± 15% | |
GABAergic neuron | 3 studies | 34% ± 15% | |
interneuron | 3 studies | 36% ± 16% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 5 studies | 30% ± 13% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
stomach | 95% | 113.23 | 341 / 359 | 92% | 5.24 | 262 / 286 |
intestine | 89% | 118.14 | 863 / 966 | 94% | 5.76 | 496 / 527 |
skin | 99% | 188.96 | 1785 / 1809 | 81% | 3.03 | 380 / 472 |
brain | 87% | 104.27 | 2308 / 2642 | 92% | 4.00 | 647 / 705 |
pancreas | 92% | 91.50 | 301 / 328 | 85% | 2.71 | 151 / 178 |
lung | 92% | 159.22 | 532 / 578 | 84% | 2.92 | 975 / 1155 |
esophagus | 84% | 129.49 | 1207 / 1445 | 91% | 4.44 | 167 / 183 |
breast | 96% | 76.94 | 440 / 459 | 75% | 2.13 | 842 / 1118 |
bladder | 95% | 81.00 | 20 / 21 | 68% | 2.91 | 343 / 504 |
adrenal gland | 91% | 288.21 | 235 / 258 | 67% | 3.49 | 154 / 230 |
thymus | 90% | 75.67 | 585 / 653 | 62% | 1.38 | 377 / 605 |
ovary | 98% | 160.34 | 177 / 180 | 51% | 0.90 | 219 / 430 |
prostate | 71% | 47.08 | 173 / 245 | 77% | 2.44 | 388 / 502 |
liver | 73% | 121.46 | 164 / 226 | 72% | 3.59 | 291 / 406 |
uterus | 86% | 76.19 | 147 / 170 | 56% | 1.47 | 257 / 459 |
kidney | 72% | 59.28 | 64 / 89 | 57% | 1.35 | 512 / 901 |
adipose | 98% | 91.39 | 1183 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 96% | 91.01 | 1283 / 1335 | 0% | 0 | 0 / 0 |
heart | 65% | 55.24 | 561 / 861 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 64% | 1.86 | 29 / 45 |
eye | 0% | 0 | 0 / 0 | 63% | 1.69 | 50 / 80 |
muscle | 56% | 26.70 | 449 / 803 | 0% | 0 | 0 / 0 |
spleen | 45% | 20.73 | 109 / 241 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 41% | 0.80 | 12 / 29 |
peripheral blood | 31% | 114.98 | 291 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0042177 | Biological process | negative regulation of protein catabolic process |
GO_0006695 | Biological process | cholesterol biosynthetic process |
GO_0016125 | Biological process | sterol metabolic process |
GO_0050709 | Biological process | negative regulation of protein secretion |
GO_0006694 | Biological process | steroid biosynthetic process |
GO_1900222 | Biological process | negative regulation of amyloid-beta clearance |
GO_0016020 | Cellular component | membrane |
GO_0005789 | Cellular component | endoplasmic reticulum membrane |
GO_0008398 | Molecular function | sterol 14-demethylase activity |
GO_0016491 | Molecular function | oxidoreductase activity |
GO_0005506 | Molecular function | iron ion binding |
GO_0020037 | Molecular function | heme binding |
Gene name | CYP51A1 |
Protein name | Cytochrome P450 family 51 subfamily A member 1 CYP51A1 protein Lanosterol 14-alpha demethylase (LDM) (EC 1.14.14.154) (CYPLI) (Cytochrome P450 51A1) (CYP51A1) (Cytochrome P450-14DM) (Cytochrome P45014DM) (Cytochrome P450LI) (Sterol 14-alpha demethylase) |
Synonyms | CYP51 |
Description | FUNCTION: Sterol 14alpha-demethylase that plays a critical role in the cholesterol biosynthesis pathway, being cholesterol the major sterol component in mammalian membranes as well as a precursor for bile acid and steroid hormone synthesis . Cytochrome P450 monooxygenase that catalyzes the three-step oxidative removal of the 14alpha-methyl group (C-32) of sterols such as lanosterol (lanosta-8,24-dien-3beta-ol) and 24,25-dihydrolanosterol (DHL) in the form of formate, and converts the sterols to 4,4-dimethyl-5alpha-cholesta-8,14,24-trien-3beta-ol and 4,4-dimethyl-8,14-cholestadien-3beta-ol, respectively, which are intermediates of cholesterol biosynthesis . Can also demethylate substrates not intrinsic to mammals, such as eburicol (24-methylene-24,25-dihydrolanosterol), but at a lower rate than DHL . . |
Accessions | ENST00000450723.5 [Q16850-2] H7C0D0 ENST00000003100.13 [Q16850-1] Q16850 ENST00000422867.1 Q05D40 A0A8I5KRT9 ENST00000691309.1 |