Name | Number of supported studies | Average coverage | |
---|---|---|---|
astrocyte | 5 studies | 35% ± 10% | |
Mueller cell | 4 studies | 26% ± 5% | |
oligodendrocyte precursor cell | 4 studies | 26% ± 9% | |
GABAergic neuron | 3 studies | 36% ± 8% | |
glutamatergic neuron | 3 studies | 38% ± 11% | |
oligodendrocyte | 3 studies | 17% ± 2% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 4 studies | 29% ± 5% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
thymus | 100% | 2481.70 | 653 / 653 | 100% | 14.99 | 602 / 605 |
brain | 100% | 1959.97 | 2638 / 2642 | 99% | 10.32 | 697 / 705 |
liver | 100% | 7147.20 | 226 / 226 | 99% | 22.27 | 400 / 406 |
kidney | 100% | 2908.36 | 89 / 89 | 98% | 23.05 | 886 / 901 |
adrenal gland | 100% | 4295.14 | 258 / 258 | 98% | 13.12 | 225 / 230 |
pancreas | 100% | 2240.83 | 328 / 328 | 97% | 11.73 | 173 / 178 |
prostate | 100% | 1843.28 | 245 / 245 | 97% | 9.68 | 486 / 502 |
stomach | 99% | 1302.45 | 355 / 359 | 95% | 8.44 | 271 / 286 |
intestine | 100% | 2415.86 | 966 / 966 | 91% | 7.73 | 482 / 527 |
breast | 100% | 1721.86 | 459 / 459 | 91% | 10.33 | 1020 / 1118 |
lung | 99% | 1824.34 | 575 / 578 | 82% | 6.97 | 948 / 1155 |
esophagus | 95% | 1810.32 | 1373 / 1445 | 85% | 8.06 | 155 / 183 |
skin | 85% | 836.40 | 1535 / 1809 | 94% | 15.41 | 442 / 472 |
bladder | 100% | 1830.10 | 21 / 21 | 77% | 5.43 | 388 / 504 |
ovary | 100% | 1803.31 | 180 / 180 | 71% | 4.59 | 306 / 430 |
uterus | 100% | 1720.11 | 170 / 170 | 65% | 4.21 | 300 / 459 |
spleen | 100% | 2716.20 | 241 / 241 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 2272.33 | 1334 / 1335 | 0% | 0 | 0 / 0 |
adipose | 100% | 1890.11 | 1203 / 1204 | 0% | 0 | 0 / 0 |
heart | 97% | 1386.94 | 833 / 861 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 90% | 16.29 | 72 / 80 |
lymph node | 0% | 0 | 0 / 0 | 83% | 4.63 | 24 / 29 |
tonsil | 0% | 0 | 0 / 0 | 58% | 3.73 | 26 / 45 |
muscle | 54% | 322.08 | 436 / 803 | 0% | 0 | 0 / 0 |
peripheral blood | 32% | 204.17 | 298 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0007601 | Biological process | visual perception |
GO_0001523 | Biological process | retinoid metabolic process |
GO_0010430 | Biological process | fatty acid omega-oxidation |
GO_0016125 | Biological process | sterol metabolic process |
GO_0005789 | Cellular component | endoplasmic reticulum membrane |
GO_0102033 | Molecular function | long-chain fatty acid omega-hydroxylase activity |
GO_0004497 | Molecular function | monooxygenase activity |
GO_0005506 | Molecular function | iron ion binding |
GO_0020037 | Molecular function | heme binding |
Gene name | CYP4V2 |
Protein name | Cytochrome P450 4V2 (Docosahexaenoic acid omega-hydroxylase CYP4V2) (EC 1.14.14.79) (Long-chain fatty acid omega-monooxygenase) (EC 1.14.14.80) CYP4V2 protein |
Synonyms | |
Description | FUNCTION: A cytochrome P450 monooxygenase involved in fatty acid metabolism in the eye. Catalyzes the omega-hydroxylation of polyunsaturated fatty acids (PUFAs) docosahexaenoate (DHA) and its precursor eicosapentaenoate (EPA), and may contribute to the homeostasis of these retinal PUFAs . Omega hydroxylates saturated fatty acids such as laurate, myristate and palmitate, the catalytic efficiency decreasing in the following order: myristate > laurate > palmitate (C14>C12>C16) . Mechanistically, uses molecular oxygen inserting one oxygen atom into a substrate, and reducing the second into a water molecule, with two electrons provided by NADPH via cytochrome P450 reductase (CPR; NADPH-ferrihemoprotein reductase). . |
Accessions | Q49AA5 ENST00000378802.5 [Q6ZWL3-1] Q6ZWL3 |