COLCA1 report

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I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
ciliated cell	13 studies	26% ± 7%	Explore
basal cell	5 studies	20% ± 4%	Explore

II. Expression across tissues

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
prostate	100%	7059.71	245 / 245	100%	54.22	501 / 502
pancreas	100%	527.67	327 / 328	71%	5.19	127 / 178
lung	97%	1137.95	562 / 578	58%	9.13	668 / 1155
thymus	99%	981.44	644 / 653	54%	3.51	329 / 605
esophagus	93%	498.02	1348 / 1445	54%	6.99	98 / 183
kidney	98%	1011.52	87 / 89	41%	2.54	368 / 901
bladder	95%	2963.90	20 / 21	42%	6.44	214 / 504
intestine	99%	712.02	953 / 966	37%	3.62	195 / 527
stomach	94%	5053.38	339 / 359	41%	2.58	116 / 286
uterus	98%	941.91	167 / 170	31%	3.51	141 / 459
ovary	97%	655.68	174 / 180	20%	0.99	87 / 430
breast	84%	394.12	384 / 459	11%	0.75	121 / 1118
brain	69%	227.07	1818 / 2642	23%	1.27	160 / 705
blood vessel	71%	186.97	942 / 1335	0%	0	0 / 0
adipose	57%	146.79	686 / 1204	0%	0	0 / 0
liver	44%	81.12	99 / 226	12%	0.54	47 / 406
spleen	55%	134.19	133 / 241	0%	0	0 / 0
tonsil	0%	0	0 / 0	49%	15.51	22 / 45
adrenal gland	42%	83.38	108 / 258	3%	0.08	6 / 230
lymph node	0%	0	0 / 0	17%	0.80	5 / 29
skin	15%	26.96	272 / 1809	1%	0.04	5 / 472
muscle	16%	24.83	126 / 803	0%	0	0 / 0
heart	12%	19.87	101 / 861	0%	0	0 / 0
peripheral blood	11%	22.25	100 / 929	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
eye	0%	0	0 / 0	0%	0	0 / 80
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0
ureter	0%	0	0 / 0	0%	0	0 / 1