Name | Number of supported studies | Average coverage | |
---|---|---|---|
oligodendrocyte precursor cell | 12 studies | 44% ± 19% | |
glutamatergic neuron | 11 studies | 49% ± 25% | |
GABAergic neuron | 6 studies | 46% ± 17% | |
neuron | 4 studies | 23% ± 6% | |
endothelial cell | 4 studies | 32% ± 15% | |
epithelial cell | 4 studies | 17% ± 1% | |
ciliated cell | 4 studies | 28% ± 8% | |
GABAergic interneuron | 3 studies | 28% ± 9% | |
GABAergic amacrine cell | 3 studies | 21% ± 5% | |
amacrine cell | 3 studies | 30% ± 13% | |
retinal pigment epithelial cell | 3 studies | 42% ± 18% | |
adipocyte | 3 studies | 17% ± 1% | |
interneuron | 3 studies | 50% ± 24% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 11 studies | 36% ± 20% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
prostate | 97% | 861.91 | 238 / 245 | 99% | 10.34 | 497 / 502 |
brain | 89% | 720.87 | 2345 / 2642 | 72% | 8.54 | 505 / 705 |
pancreas | 87% | 324.37 | 284 / 328 | 70% | 2.47 | 125 / 178 |
breast | 95% | 414.00 | 435 / 459 | 58% | 2.49 | 649 / 1118 |
ovary | 81% | 344.87 | 145 / 180 | 65% | 2.90 | 280 / 430 |
kidney | 96% | 426.80 | 85 / 89 | 47% | 3.10 | 420 / 901 |
thymus | 90% | 273.09 | 590 / 653 | 50% | 1.48 | 300 / 605 |
bladder | 95% | 1222.24 | 20 / 21 | 39% | 1.89 | 199 / 504 |
liver | 100% | 421.26 | 225 / 226 | 34% | 1.06 | 140 / 406 |
intestine | 79% | 364.21 | 762 / 966 | 26% | 0.76 | 135 / 527 |
ureter | 0% | 0 | 0 / 0 | 100% | 3.99 | 1 / 1 |
skin | 68% | 739.30 | 1232 / 1809 | 30% | 1.87 | 141 / 472 |
stomach | 80% | 280.49 | 287 / 359 | 16% | 0.37 | 45 / 286 |
spleen | 95% | 402.85 | 229 / 241 | 0% | 0 | 0 / 0 |
adrenal gland | 21% | 95.07 | 55 / 258 | 68% | 10.41 | 156 / 230 |
lung | 47% | 113.30 | 272 / 578 | 38% | 1.25 | 434 / 1155 |
adipose | 80% | 503.59 | 959 / 1204 | 0% | 0 | 0 / 0 |
heart | 75% | 299.94 | 649 / 861 | 0% | 0 | 0 / 0 |
blood vessel | 69% | 552.75 | 924 / 1335 | 0% | 0 | 0 / 0 |
esophagus | 43% | 215.36 | 615 / 1445 | 9% | 0.25 | 17 / 183 |
uterus | 29% | 128.50 | 49 / 170 | 22% | 1.40 | 102 / 459 |
eye | 0% | 0 | 0 / 0 | 30% | 1.91 | 24 / 80 |
tonsil | 0% | 0 | 0 / 0 | 11% | 0.23 | 5 / 45 |
muscle | 6% | 10.86 | 48 / 803 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 29 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
peripheral blood | 0% | 0 | 0 / 929 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0007155 | Biological process | cell adhesion |
GO_0098552 | Cellular component | side of membrane |
GO_0005576 | Cellular component | extracellular region |
GO_0005886 | Cellular component | plasma membrane |
Gene name | CNTN3 |
Protein name | Contactin-3 (Brain-derived immunoglobulin superfamily protein 1) (BIG-1) (Plasmacytoma-associated neuronal glycoprotein) |
Synonyms | KIAA1496 PANG |
Description | FUNCTION: Contactins mediate cell surface interactions during nervous system development. Has some neurite outgrowth-promoting activity (By similarity). . |
Accessions | ENST00000263665.7 Q9P232 |