CMBL report

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I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
epithelial cell	7 studies	35% ± 16%	Explore
enterocyte	6 studies	37% ± 13%	Explore
epithelial cell of proximal tubule	5 studies	62% ± 7%	Explore
kidney loop of Henle epithelial cell	4 studies	23% ± 9%	Explore
fibroblast	4 studies	27% ± 5%	Explore
hepatocyte	4 studies	25% ± 9%	Explore
progenitor cell	3 studies	29% ± 5%	Explore

II. Expression across tissues

sc-RNAseq dataData table

Name	Number of supported studies	Average coverage
kidney	4 studies	30% ± 14%	Explore
intestine	4 studies	25% ± 8%	Explore
liver	3 studies	21% ± 4%	Explore

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
kidney	100%	12484.93	89 / 89	98%	137.38	883 / 901
liver	98%	7782.51	222 / 226	92%	87.01	372 / 406
pancreas	98%	1042.76	320 / 328	92%	34.67	164 / 178
prostate	98%	1767.02	241 / 245	91%	33.03	457 / 502
intestine	99%	4371.93	960 / 966	89%	46.68	470 / 527
brain	98%	1255.95	2587 / 2642	89%	26.13	630 / 705
breast	99%	1319.74	453 / 459	87%	60.38	973 / 1118
adrenal gland	100%	3591.32	258 / 258	81%	27.88	187 / 230
stomach	99%	2450.94	355 / 359	81%	39.89	233 / 286
thymus	98%	1273.26	639 / 653	81%	18.30	489 / 605
lung	88%	828.23	509 / 578	81%	36.30	933 / 1155
bladder	100%	1138.95	21 / 21	61%	23.69	309 / 504
uterus	98%	1145.41	167 / 170	59%	19.64	271 / 459
ovary	100%	2630.69	180 / 180	52%	13.23	225 / 430
esophagus	67%	613.77	969 / 1445	68%	29.49	125 / 183
muscle	100%	7411.91	803 / 803	0%	0	0 / 0
ureter	0%	0	0 / 0	100%	12.65	1 / 1
adipose	98%	1258.43	1185 / 1204	0%	0	0 / 0
blood vessel	96%	1116.99	1280 / 1335	0%	0	0 / 0
heart	94%	1711.40	809 / 861	0%	0	0 / 0
skin	55%	731.76	1000 / 1809	37%	8.51	175 / 472
eye	0%	0	0 / 0	71%	13.13	57 / 80
tonsil	0%	0	0 / 0	49%	9.19	22 / 45
spleen	42%	203.02	102 / 241	0%	0	0 / 0
peripheral blood	23%	217.34	210 / 929	0%	0	0 / 0
lymph node	0%	0	0 / 0	7%	0.79	2 / 29
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0