CHIC1 report

Query

Invalid input gene. Please select from the suggestions.

I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
glutamatergic neuron	8 studies	40% ± 26%	Explore
oligodendrocyte precursor cell	8 studies	28% ± 13%	Explore
astrocyte	8 studies	34% ± 16%	Explore
endothelial cell	7 studies	27% ± 12%	Explore
oligodendrocyte	7 studies	29% ± 8%	Explore
interneuron	6 studies	36% ± 24%	Explore
GABAergic neuron	5 studies	45% ± 21%	Explore
microglial cell	4 studies	20% ± 5%	Explore
neuron	3 studies	25% ± 11%	Explore

II. Expression across tissues

sc-RNAseq dataData table

Name	Number of supported studies	Average coverage
brain	9 studies	36% ± 20%	Explore

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
brain	100%	1949.43	2642 / 2642	100%	9.84	704 / 705
adrenal gland	100%	1634.18	258 / 258	100%	14.41	229 / 230
prostate	100%	1452.62	245 / 245	99%	6.97	498 / 502
kidney	100%	1197.47	89 / 89	99%	10.18	892 / 901
thymus	100%	1655.68	653 / 653	98%	9.55	594 / 605
ovary	100%	1656.62	180 / 180	97%	5.52	419 / 430
breast	100%	1048.49	458 / 459	92%	7.04	1034 / 1118
pancreas	94%	410.84	307 / 328	97%	6.35	172 / 178
bladder	100%	1466.43	21 / 21	89%	4.65	449 / 504
lung	100%	952.44	577 / 578	89%	5.09	1029 / 1155
uterus	100%	1897.87	170 / 170	86%	4.79	397 / 459
skin	100%	900.39	1802 / 1809	85%	5.70	402 / 472
intestine	100%	1464.07	966 / 966	84%	4.99	442 / 527
esophagus	96%	1045.39	1388 / 1445	82%	6.47	150 / 183
stomach	95%	731.56	340 / 359	70%	4.42	200 / 286
spleen	100%	1005.94	241 / 241	0%	0	0 / 0
blood vessel	100%	1468.85	1334 / 1335	0%	0	0 / 0
adipose	100%	952.93	1201 / 1204	0%	0	0 / 0
heart	96%	905.76	827 / 861	0%	0	0 / 0
muscle	93%	515.83	748 / 803	0%	0	0 / 0
lymph node	0%	0	0 / 0	90%	4.66	26 / 29
tonsil	0%	0	0 / 0	73%	3.30	33 / 45
liver	35%	115.31	79 / 226	29%	1.49	118 / 406
eye	0%	0	0 / 0	57%	2.46	46 / 80
peripheral blood	37%	363.85	340 / 929	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0
ureter	0%	0	0 / 0	0%	0	0 / 1